Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00490 ATGAGGATGAAGTCGAGGTCACTGGATGAGTGGAGGAGTTACTTTGGGAGTGCGAATTCGGATATATTTGAGATAATTGAGCATGCCATCATTGTGGCGGCTTCGGATTGTCCTAAGGAGTTTAGAGTGAGGAGGGATGGAATCGCGGAGAGGTTGTTCTCTTCAAGGTTGACTCGGTGTTTGGGATGTGACCGtgtggagttggctgtggctgtgtctggggatgGTAAAGAGAAAGCAgatgatgatggtcatgatgatggtcttgatgaCAGGGGTTGCAAGATTGTGGGGTTTGAGAGAGAAGAAGAAGCAGGGGCAAGCAAAGAGAGCAAGGTCAATGGTGGCGGAGATTTGGATGTGAACCCTGTTAGCAACTATAGCTTTGGGGAGGCCGAGGCATTGACGGATGAGATTGAAGAGGAATCTCAGTATATAGGGGAGATTTTGAGGATCAGGGACATTCTTCATAACCGTGAAGAAGAGTCTGAGTCTGTATTGCTTGATTCATTGAGGAGGCTTAAGCTCATTGAACTCACTGTGGATTGTCTGAAGGCAACTGAGATTGGCAAAGCTGTCAACCCTCTCAGAAAGCATGGGTCAAAATATATCCGTCAACTTGCAAAGACTCTCATCGATGGCTGGAAAGAAATGGTGGATGAATGGGTAAAGGCCACTGCTACCACAGCTATTCCAGTAGGTTCTGAAGGCACACCTGATTCAGTAAATCCATCtgttgttgatgatgatgatgaagaagaAGGACTTCCATCTCCTCCTTTGGATGAAGGGGCTTTCTTTGTAACTCAAACTGGTTCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACCAACTGAGCAGTTCAACAAGAACCGTGAGAATGGGAGAAGGCCAGCTTTGAACGGCCAACTTATAGAAAAGAGGAAGTTGCAAGCCTCCCATGAGACAGACATCTCCACCAGGGACAGGGAGGTTAAGAGTCAGCAACCAAAGAAAAATGAGGCTGCTGTGTGGCTAAATAAACCAGTTACTGCTGATTCCGGTCCTGGAAGACCACCAAAATCAAATATGCAAAGAAAAAGTAACATGGAGCCAAAGATGCAGCAAAAAGTAGAGAACAATTCAAACACAAGGAGGCCTCCCACCGGTCAGCTAGATAAATCCATGCGTTCAGATGATGCGGCAGTCCAAGTGAAGCTCGAAGCCACCAAGAGGAAACTTCAGGAGAGCTATCAACAAGTTGAAAATGCTAAGAAGCAGAGAACAATACAAGTTATGGAAATAAATGATATCCCCAAGCAAGTTGTCCGCAGAAATCCACATTTCAAACCTGGATATCACAATAGGCAGTGGGCTAATGCAAGGAGATGA 1392 0.4274 MRMKSRSLDEWRSYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDGIAERLFSSRLTRCLGCDRVELAVAVSGDGKEKADDDGHDDGLDDRGCKIVGFEREEEAGASKESKVNGGGDLDVNPVSNYSFGEAEALTDEIEEESQYIGEILRIRDILHNREEESESVLLDSLRRLKLIELTVDCLKATEIGKAVNPLRKHGSKYIRQLAKTLIDGWKEMVDEWVKATATTAIPVGSEGTPDSVNPSVVDDDDEEEGLPSPPLDEGAFFVTQTGSMELSQFFDGMDDDGNPRPTEQFNKNRENGRRPALNGQLIEKRKLQASHETDISTRDREVKSQQPKKNEAAVWLNKPVTADSGPGRPPKSNMQRKSNMEPKMQQKVENNSNTRRPPTGQLDKSMRSDDAAVQVKLEATKRKLQESYQQVENAKKQRTIQVMEINDIPKQVVRRNPHFKPGYHNRQWANARR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00490 463 MobiDBLite consensus disorder prediction 315 337 - -
Cca07g00490 463 CDD TFIIS_I 146 220 - -
Cca07g00490 463 MobiDBLite consensus disorder prediction 286 300 - -
Cca07g00490 463 Coils Coil 404 427 - -
Cca07g00490 463 Pfam TFIIS helical bundle-like domain 171 219 IPR017923 -
Cca07g00490 463 ProSiteProfiles TFIIS N-terminal domain profile. 147 222 IPR017923 -
Cca07g00490 463 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 145 226 IPR035441 -
Cca07g00490 463 MobiDBLite consensus disorder prediction 361 391 - -
Cca07g00490 463 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 462 IPR044805 -
Cca07g00490 463 SMART TFS2_5 146 221 IPR003617 GO:0005634
Cca07g00490 463 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 462 - -
Cca07g00490 463 MobiDBLite consensus disorder prediction 231 264 - -
Cca07g00490 463 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 230 IPR035441 -
Cca07g00490 463 MobiDBLite consensus disorder prediction 278 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00490 Cca-Chr7 6752804 6756945 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca07g00490 Med26 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00490 - - gmx:100799367 664.455