Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00486 ATGGATTCAGACGAGGAGTCAGACAAGTACCTGTTGGGCTTCATAATGGCCAACATCGTGGGCCTGCAGCACCACTCCGGCAGCATCCACGGCCGAGCACTGGTGGGCCTAGTCCGCGAGCCCCACAACCCGCACGACCCAAACGCCATCCAAGTCCTCAACACACACTCCCTCCCCGTCGGCTACATCGAGCGCGCCGCCGCCGCCGCCCTCTCCCCCCTCATCGACGCCCACCTCGTCACCGTCGAAGCCATTGTCCCCAACGCCCGCAAAAAATCCCACCGCGTCCCCTGCCAAATCCACGTCTTTGCTCGCCTCCAAAACTTCAACGCCGTCAAACACTCCGTTACCAACTCCGGCCTCAAACTCATCACCGAGTCCAACCCcgccttcaccctctccgacgccgtcgccgtcAAAGAGACCAAAGCTCAGAATGAGTCCATGTCCGTTGACACCGTTTTCAACCTCGTCGATCGCAGCCTCGCCGATTCCACTTATAACCGCGTCATCGAACCCTTGGAGCCTACCAGAAGCATCATCAAATCGGAGCTTCTTCAGCACCAGAAGGAGGGTCTCGCGTGGCTTCTTCACCGCGAAAAGTCTCACGATTTGCCCCCTTTTTGGGAAGAAAAAAATGGCAACTTTGTAAACATCTTAACCGATTATCAAACACGTGAAAGGCCCCACCCTTTGCGAGGTGGCATTTTCGCAGATGATATGGGCTTGGGAAAGACCCTAACTTTGCTTTCTTTGATGGCTTTTGATAAAAAGAGCCAAATGGGTATCTCTGTGACCAAAAAACGAAGCAAAGTTGAAAGTGAAAGGACCCTTGGTGTGAGAACAAACGCAACTTTGGTTGTGTGTCCTCCTTCTGTTATGTCCACGTGGATAGCGGAATTGGAGGAACATACTGTGCTGGGTGGATTGAAGACTTATATGTATTATGGAGAAAGGAGGACCAAGAATGTTGAGGAGCTTAAGAAGTATGATTTGGTGTTGACTACTTACTCTACTTTGTCCAGTGAACAGCTCGTGTTGGAGATGCCGGCGAAGAAAATGTTGTGGCGGAGGATTATACTAGATGAGGCTCATGCCATCAAAAATTTCAATGCTCAACAGAGTGCAGCTGTTTGCAAGTTGAATGGTGAGTGCAGGTGGGCCGTCACAGGGACACCGATTCAAAGTGGTTGTATTGATTTGTTTTCTATCATGGTCTTTTTGCGATTTGAACCGTTTTCGGTCAGAAGCTATTGGAGAGACTTGGTGCAGCGCTCTCTTGATCAGGGCACAGACAAAGGGCTCTTACGTTTGCAGGTTTTGATGGATGCAATAGCTCTGCGAAGAACAAAAGACGTGACATTGGCGGGGCTGCCACCAAAAACGACAGAGGTTTGTTATGTTGAGCTTTCTTTGGAAGAACGTGAACTGTATGATCAGATGAAAGAGCAAACAAAGACATTGTTGAGTAGTTTTGGCCATGAGGACAGTCTAGTGCCTCAATATTCTGCTGTGCTAAGTAGGATTCTAAGACTTCGCCAAATCTGTACTGATTTGAAATTGTGTAAAGATCAGTCGCTACTCATTACAAACATTGAAGATGTTTCCAATAACCCTGAATTGCTGCAAACATTACTTGGGCAGCTGCAAGATGGTGAAGACTTTGACTGTCCAATTTGTTTATCCCCTCCCATGGATATTGTGATCACATGTTGTGCTCACATTTTTTGCCGAGGCTGTATTCTGAGAACTCTGCAAAACAACAATCCCTGTTGTCCTCTATGCCGGCATCCTCTCTCTGAATCTGACTTGTTCTCAGCCCCTCCGGAGTCTTCCAAGGCAGATGGTAATGATTTATACTCATCATCAAAAACAGGATTATCTTCCAAGGTGTCTACACTAATAAAACTCCTTACACAATCAAGGGACCAACATCCAGCAGCCAAGTCAGTTGTGTATTCGCAGTTTCGAAAATTGCTGTTGTTACTGGAAGAGCCTCTGAACGCAGCTGGTTTCAAGACTTTGCGTCTTGATGGGACAATGAATGCTAAACACAGGGCTAAAGTGATTGAGCAGTTTCAAGTGCAGGGAAGAGATGGCCCCACGGTTCTGCTTGCAAGCCTCAGAGCTTCAAGTGCAGGCATTAATCTCACATCTGCCTCTAGGCTTTACTTTATGGAGCCATGGTGGAACCATGCTGTTGAGGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAGGCTGTGAAGGTTGTCAGATTGATAGCTCAAAACAGCATTGAAGAGAAAATGTTGATGTTGCAGGAGAAGAAGAAACAACTATCTAGGAAATCTTCTGGGACGGGATTGAAGGGCATGGGTATGAACGATATACGTTTTCTTTTAGATTGA 2397 0.4685 MDSDEESDKYLLGFIMANIVGLQHHSGSIHGRALVGLVREPHNPHDPNAIQVLNTHSLPVGYIERAAAAALSPLIDAHLVTVEAIVPNARKKSHRVPCQIHVFARLQNFNAVKHSVTNSGLKLITESNPAFTLSDAVAVKETKAQNESMSVDTVFNLVDRSLADSTYNRVIEPLEPTRSIIKSELLQHQKEGLAWLLHREKSHDLPPFWEEKNGNFVNILTDYQTRERPHPLRGGIFADDMGLGKTLTLLSLMAFDKKSQMGISVTKKRSKVESERTLGVRTNATLVVCPPSVMSTWIAELEEHTVLGGLKTYMYYGERRTKNVEELKKYDLVLTTYSTLSSEQLVLEMPAKKMLWRRIILDEAHAIKNFNAQQSAAVCKLNGECRWAVTGTPIQSGCIDLFSIMVFLRFEPFSVRSYWRDLVQRSLDQGTDKGLLRLQVLMDAIALRRTKDVTLAGLPPKTTEVCYVELSLEERELYDQMKEQTKTLLSSFGHEDSLVPQYSAVLSRILRLRQICTDLKLCKDQSLLITNIEDVSNNPELLQTLLGQLQDGEDFDCPICLSPPMDIVITCCAHIFCRGCILRTLQNNNPCCPLCRHPLSESDLFSAPPESSKADGNDLYSSSKTGLSSKVSTLIKLLTQSRDQHPAAKSVVYSQFRKLLLLLEEPLNAAGFKTLRLDGTMNAKHRAKVIEQFQVQGRDGPTVLLASLRASSAGINLTSASRLYFMEPWWNHAVEEQAMDRVHRIGQKEAVKVVRLIAQNSIEEKMLMLQEKKKQLSRKSSGTGLKGMGMNDIRFLLD 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00486 798 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 411 IPR014001 -
Cca07g00486 798 CDD SF2_C_SNF 627 757 - -
Cca07g00486 798 SMART helicmild6 661 746 IPR001650 -
Cca07g00486 798 SMART ring_2 557 595 IPR001841 -
Cca07g00486 798 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 268 796 - -
Cca07g00486 798 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 3 253 - -
Cca07g00486 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 449 IPR027417 -
Cca07g00486 798 Pfam Zinc finger, C3HC4 type (RING finger) 554 600 - -
Cca07g00486 798 Pfam HIRAN domain 13 103 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cca07g00486 798 SMART HIRAN_2 12 106 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cca07g00486 798 Pfam Helicase conserved C-terminal domain 630 746 IPR001650 -
Cca07g00486 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 795 IPR027417 -
Cca07g00486 798 ProSitePatterns Zinc finger RING-type signature. 572 581 IPR017907 -
Cca07g00486 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 540 621 IPR013083 -
Cca07g00486 798 ProSiteProfiles Zinc finger RING-type profile. 557 596 IPR001841 -
Cca07g00486 798 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 633 791 IPR001650 -
Cca07g00486 798 Coils Coil 759 779 - -
Cca07g00486 798 CDD RING-HC_HLTF 556 596 - -
Cca07g00486 798 Pfam SNF2-related domain 188 520 IPR000330 GO:0005524|GO:0140658
Cca07g00486 798 SUPERFAMILY RING/U-box 540 602 - -
Cca07g00486 798 Gene3D - 2 123 - -
Cca07g00486 798 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 268 796 - -
Cca07g00486 798 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 3 253 - -
Cca07g00486 798 Gene3D - 459 793 IPR027417 -
Cca07g00486 798 Gene3D - 220 450 IPR038718 -
Cca07g00486 798 SMART ultradead3 181 423 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00486 Cca-Chr7 6657057 6661416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00486 7 780 RAD5 or RAD16-like Gene Family AT5G05130 56.843 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca07g00486 SNF2_N 2.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00486 K15711 - gmx:100791783 1190.64