Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00485 ATGGCATCCAGTTCAATGTCAGCCTCAGGGTCGTGGAGTGTTAAGGACAACAAGGCCTTTGAAAAGGCTCTAGCTGTTTATGACAAGGACACCCCTGACCGTTGGTACAATGTTGCACATGCTGTTGGTGGCAAAACTCCAGATGAAGTGAAGAGGCACTATGAACTCCTTGTTCAGGATGTTCAGCATATTGAGTCAGGACGAGTGCCATTCCCAAATTACAAGAAAAGTGGAGGATCTGAGGAGGAAAAAAGGCTGAGGAATTTGAACATCCAGTGA 279 0.4624 MASSSMSASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPDEVKRHYELLVQDVQHIESGRVPFPNYKKSGGSEEEKRLRNLNIQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00485 92 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Cca07g00485 92 CDD SANT 18 58 IPR001005 -
Cca07g00485 92 SMART sant 8 60 IPR001005 -
Cca07g00485 92 MobiDBLite consensus disorder prediction 68 92 - -
Cca07g00485 92 MobiDBLite consensus disorder prediction 77 92 - -
Cca07g00485 92 Gene3D - 2 71 - -
Cca07g00485 92 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Cca07g00485 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 92 IPR044636 GO:0003700
Cca07g00485 92 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00485 Cca-Chr7 6631754 6632876 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g00485 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00485 - - gmx:100818368 166.392