Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00478 ATGGAAAGTGGATTACCTTTGCTTAATTGTCTCTTGCAGCAGACTCTCAGAACCATTTGCATTTCTCCCAATTCTTCCACTTCTTCCAAGTGGGTATATACTGTCTTCTGGAGGATATTACCTCGAAATTTTCCTCCACCAAGGTGGGAGTTTGGTGGAACAGCTTTTGATCTCTCCAAAGGATATAAAAGGAACTGGATCCTTGTCTGGGAAGATGGGTTCTGCGATTTTAACGAATGCGAGCAAAGGAAAAGTGATGGTGGTTACTTGAACAATAGATTTGGAGCTGATATATTCTTCAAAATGTCACACGAGGTTTACAATTATGGAGAGGGACTACTGGGAAAAGTTGCTGCAGATAACAATCACAAATGGGTTTACAATGAGAATCACAATGAGTGTGAACCTAGCCAGATTGCTTCATGGAATGCTTCAGTCGAGCCTCAACCAAAGGCGTGGAAGTTTCAATTCAATTCCGGCATTCAGAGTATTGTCATAATCGCCGTTAGAGAAGGCGTAGTGCAATTGGGTTCTTTTGACAAGATTGCAGAGGACCTAAATCTGGTGATCAACATACAAAGGCAATTTAGCTACCTTCAAAGCATACCAGGAGTATTTGGTATTCAAAGACCATACCTACCCATCCAACATCCATACATTGTGAAGCCTAGTTTCATAGAAAGCAATGGAATGCCTCTCTCTACCTATGATATAGGCTGGAACCCCCCTCAGAATGGGGCACTATGCCCATCTCTTTGTTCAGGTCCTCCTACTTTATCATTACCAACCATGCCTTGCAGTTTTGGAGCTTTTCTATCAAAGCTACCATCTAGAATCCCACTCCATAATGCAGGGACACAAAGCACCATTCAGAGAGTGAAGATTGAGGACTACGAATTTCATCCTACTACCCATGATGGTGATCAGAAAGGAAAGGTTGGTTCCTTGAACAAGCAGCATAAAGGACATGAACTTTGA 978 0.4223 MESGLPLLNCLLQQTLRTICISPNSSTSSKWVYTVFWRILPRNFPPPRWEFGGTAFDLSKGYKRNWILVWEDGFCDFNECEQRKSDGGYLNNRFGADIFFKMSHEVYNYGEGLLGKVAADNNHKWVYNENHNECEPSQIASWNASVEPQPKAWKFQFNSGIQSIVIIAVREGVVQLGSFDKIAEDLNLVINIQRQFSYLQSIPGVFGIQRPYLPIQHPYIVKPSFIESNGMPLSTYDIGWNPPQNGALCPSLCSGPPTLSLPTMPCSFGAFLSKLPSRIPLHNAGTQSTIQRVKIEDYEFHPTTHDGDQKGKVGSLNKQHKGHEL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00478 325 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 12 196 IPR025610 -
Cca07g00478 325 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 1 227 - -
Cca07g00478 325 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 229 297 - -
Cca07g00478 325 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 1 227 - -
Cca07g00478 325 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 229 297 - -
Cca07g00478 325 MobiDBLite consensus disorder prediction 301 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00478 Cca-Chr7 6460283 6464518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00478 13 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 29.897 6.35e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00478 - - gmx:100793250 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00478 07 6460283 6464518 Cca07g00478 07 6460283 6464518 ECH