Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00475 ATGCCcaacctcattcactcacactcacacttattcctcctacgcctcctcctcatcctcatcctcacgtcaaccgcaCATTGCTCCAAACTAACGCCCCGTCATCTCCCGCCGTTACTTTTCACCGACGCAACCGCCCTCCTCGCCTTCAAACGCAACGCCGACGTCAACAACCGCCTCCACTTCTCCCCCGCCACGCGCGGCCTCCGCTTCTGCGCCTGGGAAGGCGTCGTATGCAACGGAGCCAAAGTGGAGCGTCTCATTCTCCAAGACTTGGATCTCCGAGGGTTTTGGCCTCCCAACACACTCACGCGTCTCGACCAGCTCCGAGTCCTCAGCTTGCAGAACAACTCACTCACCGGACCCGTACCCGACCTCACCTCTCTCTCCAATCTCAAAAGCCTCTTTCTCGATCACAACCACTTCACCGGTTCTCTCCCTCCCTCCCTCTTCTTTCTCCACCGTCTCCGAAACTTGGATTTCTCTCACAACAACCTCTCCGGTTCAATCTCCACCGCCTTCACTAACCTAGACCGCCTCCACACCCTCCGTCTCGCTTCTAACTTCCTCAACGGTTCAATCCCTCCGTTTAACCAGTCTTCTCTCAAAATATTCGATGTTTCCGCCAACAACCTCTCCGGCGCCATTCCGCTCACGCCCACGCTGTTACGTTTTCCGGCTTCCTCCTTCGCATTCAACCCTAACCTCTGCGGCGAGATCATCCGCGTGCAATGCCGTCCATCGCAGCCTTTCTTCGGACCTGCGGCGCCGCCTACGGCGCCGCTCGGCCAGAGCGCGCGGGGGCACGGCGTCGACGGTTTGATCCGGCAGCCGTACGAGAAGAAGCGGCGCGACCGGCGCGCGCTGATAATCGGATTCTCGGCGGGGGTTTTGGTGGTGGTGTGCTCGCTGGCGTGGTTGGCGGCGGCGGTGAGGAAGCAGAGGAGTCGGAGCAAGAAGGAGGGGAGGTCGGGGATGATggcggcggatgctttggcgacggcggaagcggcggcggtgatgcggatggagatggagagggagctggaggagaaggtgaagaGAGCGGAGGTGGCGAAGAGTGGGAGCTTGGTATTCTGTGCGGGGGAGGCGCAGGTGTATACGCTGGAGCAGCTGATGAAGGGGTCTGCGGAGCTGTTGGGGAGAGGGTGTTTGGGAACGACTTATAAGGCGGTTCTTGATAACCGTCTGATGGTGACCGTGAAGCGGCTTGATGCGGGGAAAATGGCTGCGCATGCTACTAAGGAAGTGTTCGAGCGTCACATGGAATCCGTGGGTGGCCTTCGACACCCCAATTTGGTTCCTCTTAGGGCCTATTTCCAGGCCAAGCAAGAGAGGCTCATTATCTATGACTTCCAGCCCAATGGCAGCCTCTTCTCCCTCATTCACGGTTCGAGATCAAGCAGGGCAAGACCACTGCATTGGACATCGTGCTTAAAAATAGCAGAGGACGTTGCACAAGGTCTGGCCTTCATCCACCAGGCATGGAGACTGGTCCACGGAAATCTCAAGTCCTCGAATGTTCTACTTGGGCCTGATTTCGAGGCATGCATCACAGATTACTGCCTGTCCGTGTTGACACAGCCATCCATATTTGACGAAGATGGTGATTCAGCAGCCTACAGAGCTCCAGAGACTCGCAACCCAAATCATCACCCAACCCACAAATCCGATGTATATGCATATGGGGTTTTGTTGCTTGAGCTTCTGACGGGGAAATTCCCCTCCGAACTCCCATTCATGGCTCCTGGTGATATGTCAAGTTGGGTGAGGTCCATCAGAGATGACAATGGGGGCGAGGATGGCCGAATGGACATGCTTCTTCAGGTTGCTACAACTTGTAGCTTGACCTCGCCTGAGCAGAGGCCCACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTATTGGAGGATACTGGTGAATTGGAACTACGCACTACTGATTCCATGTCTTAG 1992 0.5156 MPNLIHSHSHLFLLRLLLILILTSTAHCSKLTPRHLPPLLFTDATALLAFKRNADVNNRLHFSPATRGLRFCAWEGVVCNGAKVERLILQDLDLRGFWPPNTLTRLDQLRVLSLQNNSLTGPVPDLTSLSNLKSLFLDHNHFTGSLPPSLFFLHRLRNLDFSHNNLSGSISTAFTNLDRLHTLRLASNFLNGSIPPFNQSSLKIFDVSANNLSGAIPLTPTLLRFPASSFAFNPNLCGEIIRVQCRPSQPFFGPAAPPTAPLGQSARGHGVDGLIRQPYEKKRRDRRALIIGFSAGVLVVVCSLAWLAAAVRKQRSRSKKEGRSGMMAADALATAEAAAVMRMEMERELEEKVKRAEVAKSGSLVFCAGEAQVYTLEQLMKGSAELLGRGCLGTTYKAVLDNRLMVTVKRLDAGKMAAHATKEVFERHMESVGGLRHPNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTQPSIFDEDGDSAAYRAPETRNPNHHPTHKSDVYAYGVLLLELLTGKFPSELPFMAPGDMSSWVRSIRDDNGGEDGRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDTGELELRTTDSMS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00475 663 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 15 651 - -
Cca07g00475 663 Gene3D Phosphorylase Kinase; domain 1 343 459 - -
Cca07g00475 663 SUPERFAMILY Protein kinase-like (PK-like) 385 640 IPR011009 -
Cca07g00475 663 Gene3D Ribonuclease Inhibitor 154 238 IPR032675 -
Cca07g00475 663 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515
Cca07g00475 663 Pfam Protein kinase domain 385 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00475 663 Gene3D Transferase(Phosphotransferase) domain 1 461 652 - -
Cca07g00475 663 ProSiteProfiles Protein kinase domain profile. 381 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00475 663 SUPERFAMILY L domain-like 41 230 - -
Cca07g00475 663 Gene3D Ribonuclease Inhibitor 42 153 IPR032675 -
Cca07g00475 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00475 Cca-Chr7 6438934 6443934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00475 43 663 Receptor kinase-like Gene Family AT5G43020 55.329 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca07g00475 Pkinase 3.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00475 - - gmx:100817172 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00475 07 6438934 6443934 Cca07g00475 07 6438934 6443934 ECH