Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00472 atgaaggaagAAGGATTAGGAGATTGTTGTTCCTCGAATTCGACGATCACGAGGAAAAGCGAGAAACGGAAGCAGCAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAACCCAACAAGAGGTCCAGGATATGGTTGGGCTCCTAcgccacccccgtcgccgccgcacgcgcctacgacaccgccgTCTTCTACCTCAGAGGCCCTTCCGCTCGCCTCAACTTCCCCGAACTGCTCTCCCAAGACGACGACGTTTCCACCCAACAAGGCAACATGTCCGCCGACTCAATACGCAAGAAAGCCACCCAAGTCGGCGCCAGAGTCGACGCCCTCCAAACCGCGCTTCAGTCCTCCTCCTCCCACTCCGCTTCCAGCCACATCACTTCCGAAAAACCAGACTTGAACGAGTTCCCAAAACCTGAAGATTAA 459 0.4749 MKEEGLGDCCSSNSTITRKSEKRKQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLSQDDDVSTQQGNMSADSIRKKATQVGARVDALQTALQSSSSHSASSHITSEKPDLNEFPKPED 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00472 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 152 - -
Cca07g00472 152 MobiDBLite consensus disorder prediction 1 30 - -
Cca07g00472 152 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Cca07g00472 152 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Cca07g00472 152 MobiDBLite consensus disorder prediction 93 152 - -
Cca07g00472 152 MobiDBLite consensus disorder prediction 93 108 - -
Cca07g00472 152 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Cca07g00472 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 152 - -
Cca07g00472 152 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Cca07g00472 152 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Cca07g00472 152 MobiDBLite consensus disorder prediction 119 141 - -
Cca07g00472 152 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Cca07g00472 152 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Cca07g00472 152 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00472 Cca-Chr7 6345831 6347576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00472 23 152 AP2-EREBP Transcription Factor Family AT2G23340 58.333 1.80e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g00472 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00472 K09286 - gmx:100801528 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00472 07 6345831 6347576 Cca07g00472 07 6345831 6347576 ECH