Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00470 ATGGGCAGCATGAAGGTGCATCAGTTCACACGTGGATTCTGGGAGCATGAACCTTTCCTCACGCTTGGCTTCAAGCGATTACGCCCTCTTGCTCCCAAGCTTCCCAACACCGACACTACTACTCCTTCTGTTCCTTTCGATCTTAAGAGCTTCATCAGGCCAGAAAGTGGCCCCAGAAAACACGTTTCCTCTCATGACAATAAGAAGGATCCACCTTCACCCCAATCCCAGGTTGAAACGCATATTCCTGGAGGGACACGGTGGAATCCTACGCAAGAACAGATAGGGATATTGGAGATGTTGTACAAAGGAGGGATGCGAACTCCGAATGCTCAACAGATAGAGCAGATCACGGTCCAGCTTGGCAAGTACGGTAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAACAGCCTTACCTTttctcattctcattctcattctcattctcCTCCAACTCCCTCCATTCATAGTGTCGTTACTTTGGAGACCACAAGGGGGGAAGTAGTAGAGAGAGATTATGAGGAAGATAGTCCGTACAAGAAGAAGTGTAGGAGATGGGTATTTGAGTGTTTGGAAGGCGAAAGCAAGTTAGCATGCGAAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 696 0.4655 MGSMKVHQFTRGFWEHEPFLTLGFKRLRPLAPKLPNTDTTTPSVPFDLKSFIRPESGPRKHVSSHDNKKDPPSPQSQVETHIPGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLTFSHSHSHSHSPPTPSIHSVVTLETTRGEVVERDYEEDSPYKKKCRRWVFECLEGESKLACEEEEHRTLELFPLHPEGR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00470 231 CDD homeodomain 86 147 IPR001356 GO:0003677
Cca07g00470 231 Gene3D - 86 151 - -
Cca07g00470 231 ProSiteProfiles 'Homeobox' domain profile. 91 146 IPR001356 GO:0003677
Cca07g00470 231 MobiDBLite consensus disorder prediction 141 170 - -
Cca07g00470 231 Pfam Homeodomain 86 145 IPR001356 GO:0003677
Cca07g00470 231 SMART HOX_1 83 150 IPR001356 GO:0003677
Cca07g00470 231 MobiDBLite consensus disorder prediction 33 90 - -
Cca07g00470 231 MobiDBLite consensus disorder prediction 69 90 - -
Cca07g00470 231 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 231 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cca07g00470 231 MobiDBLite consensus disorder prediction 53 68 - -
Cca07g00470 231 MobiDBLite consensus disorder prediction 156 170 - -
Cca07g00470 231 SUPERFAMILY Homeodomain-like 85 153 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00470 Cca-Chr7 6303205 6304406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00470 4 152 Wox Gene Family AT1G46480 65.644 7.29e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca07g00470 Homeodomain 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00470 - - gmx:100781015 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00470 07 6303205 6304406 Cca07g00470 07 6303205 6304406 ECH