Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00469 aTGGCGCAAACTCAAGAAGTTTCCGGTGCAAACCACCGGCTGCAGACCAACACCGCTTTGTATGTCGGCGATCTTCACCGCAACGTCACCAAAGACGAGCTCTACAATCTCTTCAACCAGATTGGCAATGTTTCTTCCGTTAAGATATGCGAGAACAACTTAACCGGAGAATCTCTCGGTTACGGCTACGTCAATTTCTCTGACCCACTCATCGCGGATAAAGCAATAGAAGAGCTGAATTTCACTCCGTTGTATGGTAAACCTATTAGAATAATGAACTGTAACCGGGACCCTAGAGTTCGGAACAATGATGCAGCTAATCTTTTTGTAAAGAATTTGGATAAGGCAGTGGATCACAAGGCTTTACGGGATATGTTTTCTCCCTTTGGGACTATTGTTTCTTACAAGATTGCAACAGATGATTCTGGCGAGTCAAAAGGATTTGGTTTTGTGCAGTTCGAGACTGAACAATCTGCTAAAAACGCAACTTACTCGTTAAATGGTACCATGATGAATGGTAAACAGGTGTACGTGGGTCCTTTCGTGCGGAAGGAGAATAGAGAGAGTACGAGTGCTGCAAGTGGCGACAAGTTTACCAACGTCTATGTGAAAAGCCAGTCCATTTCAACTACGGCTGATGACTTGAAGAGAATTTTTGGAGAGTATGGAGCTATTACAAGTGCTGTAGTGATGAAAAATTCAGAAGGTGTATCGAAATGTTTTGGTTTCATCAATTTTGCAAGTGCAGACGATGCCGCTAAAGCCGTGGGGGAACTAAATGGAAAGACATTTGATGGTAAAGAGTGGTATGTTGGAAAAGCCATGAAAAAATCTGAAAGGCTGCTTGAATTGAAAGAAAAATACGGGGGAAGTGAGAAGGAGAGTGCTGCAAACTTGTATGTAAAGAACTTGAACGATTCTATTGGTGATGCAGAACTCAAGGACCTGTTCTTAAAATTTGGTACGATAACCTCGTGCAAGGTTATGCAAGATGAAAAAGGCTTCAGTAGAGGATCAGGATTTGTTGCATTTTCGAAGCAGAGGGAAGCAATTCAGGCTCTTGCTATGATGAACGGTTCAATCGTTGCGGGCAAACCTCTCTATGTTTCCTTTGCAGAGAGAAAAGCAGAGAGAAAAGCAAGGTTGCAGCAAAACTTTTCACAAATGAGGCCAACTCAAACGGCCCCTCATGTTGCACTTGCACCTCGACTGCTACCATTCCCCCTGGGGTCTCACTCGATGGGGGAAGAATATTTGTACGGGCAAACACCTCCATTCATCATACCACGTCAAGGTGAATTTGGTTACCAGCAGCATTGTGTTCCTGGAATGAGACTAGTTGGTCAGGAGCCAGGAGGACACGGAGGAGCAGGTGCTCCAATGCCACTTCAACCATTGGTGCAACAACAGATGCTTCCAAGGGGACCCTTTGTCTATCATCATGCTCATGGTCCGGTGGCTTATGGCACGGGTGGACAGGCAATGCCCTTTCAGAGCTTGGTCACGGCCCTTGCCAATGCTAGTCCTGAAATGCAGAGACAGATCCTTGGTGATGCTTTATACCCGTTAGTAGAAAATCTGGTGCATGACTCAACCACAACAGGAAGGGTTACTGGTATGCTTTTAGACTTGGACCAGCCTGAGGTTTTCCTCCTGAGTCCTCACTTGGCCAAGGATGTACTTTCGATTTTTCTTATTAAGGTTTCCCTCTCGAATCGTCACTCGGCCAAGGATGTACCTTTGGATTTCTTGAAGGTTTCCCTCCCGAGTCGTCACTCGGCCAAGGATGTACCTTTGGATTTCTTGAAGGTTTCCCTCCCGAGTCGTCACTCGGCCAAGGATTTCGCCGTTCGGTTACCATTGAAAGACTCCTTAGGCAGCTTGAACCTGTTCGGCGCCTTCGGTAGCCTGAACCCGTTCGGCACCCTCGGCAGGCTCAACCTATTCAGCACCCTCGGTAGCCTGAACCCCTTCAACACCTTCGGCAGCCTGAACCCGTTCGGCACCCTCGACAGCCTGAACCCGTTCGGCACCTTCGGTAGCCTAAACCCGTTTGGCAGCCTCGGCAACCTAAACCTGTTCGGCACCTTCAGCAGCGTTTTGGCACCCTCGGCAACTCAAACCTATTCGGCACCTTCGACAGCCTGA 2148 0.4749 MAQTQEVSGANHRLQTNTALYVGDLHRNVTKDELYNLFNQIGNVSSVKICENNLTGESLGYGYVNFSDPLIADKAIEELNFTPLYGKPIRIMNCNRDPRVRNNDAANLFVKNLDKAVDHKALRDMFSPFGTIVSYKIATDDSGESKGFGFVQFETEQSAKNATYSLNGTMMNGKQVYVGPFVRKENRESTSAASGDKFTNVYVKSQSISTTADDLKRIFGEYGAITSAVVMKNSEGVSKCFGFINFASADDAAKAVGELNGKTFDGKEWYVGKAMKKSERLLELKEKYGGSEKESAANLYVKNLNDSIGDAELKDLFLKFGTITSCKVMQDEKGFSRGSGFVAFSKQREAIQALAMMNGSIVAGKPLYVSFAERKAERKARLQQNFSQMRPTQTAPHVALAPRLLPFPLGSHSMGEEYLYGQTPPFIIPRQGEFGYQQHCVPGMRLVGQEPGGHGGAGAPMPLQPLVQQQMLPRGPFVYHHAHGPVAYGTGGQAMPFQSLVTALANASPEMQRQILGDALYPLVENLVHDSTTTGRVTGMLLDLDQPEVFLLSPHLAKDVLSIFLIKVSLSNRHSAKDVPLDFLKVSLPSRHSAKDVPLDFLKVSLPSRHSAKDFAVRLPLKDSLGSLNLFGAFGSLNPFGTLGRLNLFSTLGSLNPFNTFGSLNPFGTLDSLNPFGTFGSLNPFGSLGNLNLFGTFSSVLAPSATQTYSAPSTA 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00469 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Cca07g00469 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 90 IPR000504 GO:0003723
Cca07g00469 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Cca07g00469 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 367 IPR000504 GO:0003723
Cca07g00469 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Cca07g00469 715 Gene3D - 98 179 IPR012677 -
Cca07g00469 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
Cca07g00469 715 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 19 470 IPR006515 GO:0003723
Cca07g00469 715 CDD RRM2_I_PABPs 104 180 IPR045305 -
Cca07g00469 715 PANTHER POLYADENYLATE-BINDING PROTEIN 1-RELATED 12 552 - -
Cca07g00469 715 CDD RRM1_I_PABPs 19 98 - -
Cca07g00469 715 Gene3D - 290 398 IPR012677 -
Cca07g00469 715 SUPERFAMILY RNA-binding domain, RBD 17 187 IPR035979 GO:0003676
Cca07g00469 715 Pfam Poly-adenylate binding protein, unique domain 504 551 IPR002004 GO:0003723
Cca07g00469 715 SMART poly_2 508 564 IPR002004 GO:0003723
Cca07g00469 715 Gene3D - 180 281 IPR012677 -
Cca07g00469 715 SMART rrm2_1 200 272 IPR003954 GO:0003676
Cca07g00469 715 SMART rrm2_1 298 370 IPR003954 GO:0003676
Cca07g00469 715 SMART rrm2_1 107 179 IPR003954 GO:0003676
Cca07g00469 715 PANTHER RNA BINDING PROTEIN 12 552 - -
Cca07g00469 715 SUPERFAMILY RNA-binding domain, RBD 195 282 IPR035979 GO:0003676
Cca07g00469 715 SUPERFAMILY RNA-binding domain, RBD 294 391 IPR035979 GO:0003676
Cca07g00469 715 Gene3D - 491 558 - -
Cca07g00469 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Cca07g00469 715 Gene3D - 1 97 IPR012677 -
Cca07g00469 715 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 496 576 IPR002004 GO:0003723
Cca07g00469 715 SMART rrm1_1 298 370 IPR000504 GO:0003723
Cca07g00469 715 SMART rrm1_1 107 179 IPR000504 GO:0003723
Cca07g00469 715 SMART rrm1_1 200 272 IPR000504 GO:0003723
Cca07g00469 715 SMART rrm1_1 19 92 IPR000504 GO:0003723
Cca07g00469 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 374 IPR000504 GO:0003723
Cca07g00469 715 SUPERFAMILY PABC (PABP) domain 457 552 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00469 Cca-Chr7 6285791 6292988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00469 17 558 Eukaryotic Initiation Factors Gene Family AT4G34110 50.256 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00469 K13126 - gmx:100778879 586.645