Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00468 ATGGGCGAAGAATATTTGTACGGGCAAACACCTCCATTCATCATACCACGTCAAGGTGAATTTGGTTACCAGCAGCATTGTGTTCCTGGAATGAGACTAGTTGGTCAGGAGCCAGGAGGACACGGAGGAGCAGGTGCTCCAATGCCACTTCAACCATTGGTGCAACAACAGATGCTTCCAAGGGGACCCTTTGTCTATCATCATGCTCATGGTCCGGTGGCTTATGGCACGGGTGGACAGGCAATGCCCTTTCAGAGCTTGGTCACGGCCCTTGCCAATGCTAGTCCTGAAATGCAGAGACAGATCCTTGGTGATGCTTTATACCCGTTAGTAGAAAATCTGGTGCATGACTCAACCACAACAGGAAGGGTTACTGGTATGCTTTTAGACTTGGACCAGCCTGAGGTATTACATCTGCTTGAGGAACCAAATGCTTTCAGGATCAAAGTTGACGAGATGATAAATACCTTGAGAGACAAAACAATTGATAGACTCAAGTCAATCTCTATCCTTGATTAA 519 0.4682 MGEEYLYGQTPPFIIPRQGEFGYQQHCVPGMRLVGQEPGGHGGAGAPMPLQPLVQQQMLPRGPFVYHHAHGPVAYGTGGQAMPFQSLVTALANASPEMQRQILGDALYPLVENLVHDSTTTGRVTGMLLDLDQPEVLHLLEEPNAFRIKVDEMINTLRDKTIDRLKSISILD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00468 172 Gene3D - 78 161 - -
Cca07g00468 172 SUPERFAMILY PABC (PABP) domain 44 160 IPR036053 GO:0003723
Cca07g00468 172 SMART poly_2 95 160 IPR002004 GO:0003723
Cca07g00468 172 Pfam Poly-adenylate binding protein, unique domain 91 156 IPR002004 GO:0003723
Cca07g00468 172 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 83 162 IPR002004 GO:0003723
Cca07g00468 172 PANTHER POLYADENYLATE-BINDING PROTEIN 79 164 - -
Cca07g00468 172 PANTHER POLYADENYLATE-BINDING PROTEIN 1 62 - -
Cca07g00468 172 PANTHER RNA BINDING PROTEIN 79 164 - -
Cca07g00468 172 PANTHER RNA BINDING PROTEIN 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00468 Cca-Chr7 6274388 6275433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00468 1 159 Eukaryotic Initiation Factors Gene Family AT2G23350 40.933 2.01e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00468 K13126 - ccaj:114915694 265.774