Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00467 ATGCACTCTAACCGGGACCCTAGCGTTCGGAACAATTATGAAGCTAATCTTTTTGTGAAGGCAGTGGATCACAAGGGTTTTTGGGATATGTTTTCGCCCTTTGGGACTATTGTTTCTAAAAAGACTGCGACAGATGATTCTAGCGAGTCAAAAGGCTATGGTGTATGTGGGTCCTTTAATTTCGTGCGGAAGGAGAGTAGAGGGAGTACTAGTGCTCCAAGTTGCGACAACTTTAGCAATGTCTATGTGAAAAGCCTGTCCAACTCAACTACGGGTAATGACTTGAAGAGAATTTTTGGAGAATATGGAGCTATTACAAGTGCTGTAGTGATGACAAATTCAGAAGGTGTACCGAAATGTTTTGGTTTCGTCAATTTTGCAAGGGCAGACGATACCGCTAAAGTCGTGGGGGAACTAAATGGAAAGAGATTTGATGGTAAAGAGTGA 447 0.4251 MHSNRDPSVRNNYEANLFVKAVDHKGFWDMFSPFGTIVSKKTATDDSSESKGYGVCGSFNFVRKESRGSTSAPSCDNFSNVYVKSLSNSTTGNDLKRIFGEYGAITSAVVMTNSEGVPKCFGFVNFARADDTAKVVGELNGKRFDGKE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00467 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 148 IPR000504 GO:0003723
Cca07g00467 148 PANTHER POLYADENYLATE-BINDING PROTEIN 70 145 - -
Cca07g00467 148 PANTHER POLYADENYLATE-BINDING PROTEIN 1 56 - -
Cca07g00467 148 SMART rrm1_1 80 148 IPR000504 GO:0003723
Cca07g00467 148 PANTHER RNA BINDING PROTEIN 1 56 - -
Cca07g00467 148 SUPERFAMILY RNA-binding domain, RBD 75 147 IPR035979 GO:0003676
Cca07g00467 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 148 IPR000504 GO:0003723
Cca07g00467 148 Gene3D - 62 148 IPR012677 -
Cca07g00467 148 PANTHER RNA BINDING PROTEIN 70 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00467 Cca-Chr7 6272941 6273564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00467 1 148 Eukaryotic Initiation Factors Gene Family AT4G34110 46.893 6.05e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00467 K13126 - twl:120009451 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00467 07 6272941 6273564 Cca07g00467 07 6272941 6273564 ECH