Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00466 ATGGCGCAAACTCAAGAAGTTTCCGGTGCAAACCACCGGCTGCAGACCAACACCGCTTTGTATGTCGGCGATCTTCACCGCAACGTCACCAAAGACGAGCTCTACAATCTCTTCAACCAGATTGGCAATGTTTCTTCCGTTAAGATATGCGAGAACAACTTAACCGGAGAATCTCTCGCTAATCTTTTTGTAAAGAATTTGGATAAGGCAGTGGATCACAAGGCTTTACGGGATATGTTTTCTCCCTTTGGGACTATTGTTTCTTACAAGATTGCAACAGATGATTCTGGCGAGTCAAAAGGATTTGGTTTTGTGCAGTTCGAGACTGAACAATCTGCTAAAAGCGCAACTTACACGTTAAATGGTACCATGATGAATGGTAAACAGGTGTACGTGGGTCCTTTCGTGCGGAAGGAGAATAGAGAGAGTACGAGTGCTGCAAGTGGCGACAAGTTTACCAACGTCTATGTGAAAAGCCAGTCCATTTCAACTACGGCTGATGACTTGAAGAGAATTTTTGGAGAGTATGGAGCTATTACAAGTGCTGTAGTGATGAAAAATTCAGAAGGTGTATCGAAATGTTTTGGTTTCATCAATTTTGCAAGTGCAGACGATGCCGCTAAAGCCGTGGGGGAACTAAATGGAAAGACATTTGATGGTAAAGAGTGGTATGTTGGAAAAGCCATGAAAAAATCTGAAAGGCTGCTTGAATTGAAAGAAAAATACGGGGGAAGTGAGAAGGAGAGTGCTGCAAACTTGTATGTAAAGAACTTGAACGATTCTATTGGTGATGCAGAACTCAAGGACCTGTTCTTAAAATTTGGTACGATAACCTCGTGCAAGGTTATGCAAGATGAAAAAGGCTTTAGTAGAGGATCAGGATTTGTTGCATTTTCGAAGCAGAGGGAAGCAATTCAGGCTATTGCTGTGATGAGCGGTTACGTCTCTATGTTTCCTTTGCAGAGAGAAAAGCAGAGAGAAAAGCAAGGTTGCAGCAAAACTTTTCACAAATGA 1014 0.4231 MAQTQEVSGANHRLQTNTALYVGDLHRNVTKDELYNLFNQIGNVSSVKICENNLTGESLANLFVKNLDKAVDHKALRDMFSPFGTIVSYKIATDDSGESKGFGFVQFETEQSAKSATYTLNGTMMNGKQVYVGPFVRKENRESTSAASGDKFTNVYVKSQSISTTADDLKRIFGEYGAITSAVVMKNSEGVSKCFGFINFASADDAAKAVGELNGKTFDGKEWYVGKAMKKSERLLELKEKYGGSEKESAANLYVKNLNDSIGDAELKDLFLKFGTITSCKVMQDEKGFSRGSGFVAFSKQREAIQAIAVMSGYVSMFPLQREKQREKQGCSKTFHK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00466 337 Gene3D - 61 149 IPR012677 -
Cca07g00466 337 PANTHER POLYADENYLATE-BINDING PROTEIN 2 60 314 - -
Cca07g00466 337 Gene3D - 1 60 IPR012677 -
Cca07g00466 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 65 IPR000504 GO:0003723
Cca07g00466 337 Gene3D - 150 251 IPR012677 -
Cca07g00466 337 SUPERFAMILY RNA-binding domain, RBD 247 314 IPR035979 GO:0003676
Cca07g00466 337 PANTHER RNA BINDING PROTEIN 60 314 - -
Cca07g00466 337 PANTHER RNA BINDING PROTEIN 15 59 - -
Cca07g00466 337 PANTHER POLYADENYLATE-BINDING PROTEIN 2 15 59 - -
Cca07g00466 337 Gene3D - 252 332 IPR012677 -
Cca07g00466 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 223 IPR000504 GO:0003723
Cca07g00466 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 58 IPR000504 GO:0003723
Cca07g00466 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 314 IPR000504 GO:0003723
Cca07g00466 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 130 IPR000504 GO:0003723
Cca07g00466 337 SMART rrm1_1 252 323 IPR000504 GO:0003723
Cca07g00466 337 SMART rrm1_1 154 226 IPR000504 GO:0003723
Cca07g00466 337 SMART rrm1_1 61 133 IPR000504 GO:0003723
Cca07g00466 337 SUPERFAMILY RNA-binding domain, RBD 11 58 IPR035979 GO:0003676
Cca07g00466 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 230 IPR000504 GO:0003723
Cca07g00466 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 132 IPR000504 GO:0003723
Cca07g00466 337 SUPERFAMILY RNA-binding domain, RBD 60 233 IPR035979 GO:0003676
Cca07g00466 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 313 IPR000504 GO:0003723
Cca07g00466 337 CDD RRM2_I_PABPs 60 134 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00466 Cca-Chr7 6269739 6271487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00466 153 327 Eukaryotic Initiation Factors Gene Family AT4G34110 31.319 8.57e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00466 K13126 - gmx:100780329 345.51