Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00455 ATGGCTTCTACAAACAATTCTTCATCCCTACCTACTGATGATTATGCAAATCCTTACTTTCTTCATCCATCGGACAATCCAGGAGCTTTTATTGTTTCCCAACCCCTGAATGGCGAAAACTATAATTCTTGGAGTAGAGCAATCTTGATGGCTGGTTTAGTTAATAGTTTGCTAAGAATTGGAGATGGAATATCTTTGAATTCTGGTGTGCATTCTGTTGCTGATATTTCACTACATGATCAATTTTCTTGTGGAAATGACTATGCCTTGAAGGTAAGAAAACCATATACTATCACAAAGCAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCCGGGCCTGGCGACGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTGTTCGAGAGTCTAGTGGGAACAGCACAGCCTTGGAGGAATCAATTGAAATTCCACCTCCACGACCTAAGCGGAAGCCAATTCATCCTTATCCTCGTAAACTAGTTGAGATTCCAAAGAAAGAAATTTCCAACTCCGAACACCCTCTGAGGTCTAATTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCAGTGTTATCTGCAATTGTTTCAGAAACCCTTGGAATATAA 693 0.4012 MASTNNSSSLPTDDYANPYFLHPSDNPGAFIVSQPLNGENYNSWSRAILMAGLVNSLLRIGDGISLNSGVHSVADISLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRESSGNSTALEESIEIPPPRPKRKPIHPYPRKLVEIPKKEISNSEHPLRSNSLKSSDFGQENNSPKSVLSAIVSETLGI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00455 230 Pfam gag-polypeptide of LTR copia-type 22 51 IPR029472 -
Cca07g00455 230 MobiDBLite consensus disorder prediction 158 217 - -
Cca07g00455 230 CDD SANT 104 147 IPR001005 -
Cca07g00455 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Cca07g00455 230 MobiDBLite consensus disorder prediction 197 217 - -
Cca07g00455 230 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Cca07g00455 230 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Cca07g00455 230 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 149 IPR006447 GO:0003677
Cca07g00455 230 SUPERFAMILY Homeodomain-like 96 150 IPR009057 -
Cca07g00455 230 MobiDBLite consensus disorder prediction 167 196 - -
Cca07g00455 230 ProSiteProfiles SANT domain profile. 100 151 IPR017884 -
Cca07g00455 230 SMART sant 101 149 IPR001005 -
Cca07g00455 230 PANTHER PROTEIN REVEILLE 7-RELATED 75 229 - -
Cca07g00455 230 Gene3D - 104 151 - -
Cca07g00455 230 PANTHER SWI/SNF COMPLEX-RELATED 75 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00455 Cca-Chr7 6089525 6090939 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g00455 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00455 - - ccaj:109818513 323.168