Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00452 ATGGAGCAGTTAAAGCCGGAGGAGGAGGAGCTTGACATGATGATGCACCAGCATCATCACCTCCCTCAATTTTCTCAACCATACACCAACACCTTTCATCCCCCAGATGAGGACTTCTATGGTAACAACGATATACGCAGCACCATGCCACTGCCACTAGCAGATTTAATCGATAACAACCCTCCTTATTGGTCTTCATTTACACACTTATTACCCTCCACCTCTGGGATCTCTTTCTCCAAAGATAACCCTACCCCAATAATAACGCTTCAAGAACAAGAACAAAGCGAGGGTGAGAAGCGGAACTCGATGGCAGCGATGAGGGAGATGATATTCAGAATGGCGGCGATGCAGCCCATACACATAGACCCTGAGTCGGTGAAGCCGCCCAAGCGAAGGAACGTCAAGATTTCCAAGGACCCTCAGAGCGTGGCGGCGCGCCACCGCAGAGAGAGGATCAGCGAGAAGATAAGGATACTGCAGAGACTTGTCCCCGGAGGAACTAAGATGGACACTGCCTCCATGCTCGATGAAGCCATTCACTACGTCAAGTTTCTCAAAACGCAGGTTCAGTCGCTCCAACGCGCTTCCTCCACGCCGCTTCCTCTTAATAACGCTGTTGGCTTCCCTGTTCCTATCAATACTAGGACTACTACCACTTCCAACCCTTTTTTTCCTTTACCTAAACCTTACGGAGAAGATGCATCAatatga 714 0.4916 MEQLKPEEEELDMMMHQHHHLPQFSQPYTNTFHPPDEDFYGNNDIRSTMPLPLADLIDNNPPYWSSFTHLLPSTSGISFSKDNPTPIITLQEQEQSEGEKRNSMAAMREMIFRMAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLQRASSTPLPLNNAVGFPVPINTRTTTTSNPFFPLPKPYGEDASI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00452 237 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 2 217 IPR045843 GO:0003700|GO:0006355
Cca07g00452 237 SMART finulus 143 192 IPR011598 GO:0046983
Cca07g00452 237 CDD bHLH_AtIND_like 138 194 - -
Cca07g00452 237 Pfam Helix-loop-helix DNA-binding domain 146 186 IPR011598 GO:0046983
Cca07g00452 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Cca07g00452 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 196 IPR036638 GO:0046983
Cca07g00452 237 Gene3D - 136 201 IPR036638 GO:0046983
Cca07g00452 237 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 2 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00452 Cca-Chr7 5991421 5992479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00452 76 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 76.471 2.08e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g00452 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00452 - - gmx:100815041 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00452 07 5991421 5992479 Cca07g00452 07 5991421 5992479 ECH