Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00450 ATGAACTTCAAGGGCTTCGGGAATGAGGCcgccggcggcgacggcggcggcggcggagggagggcggcggGGAGCTTCTCCCTGGCGCGGCAGCCGTCGGTGTACTCGCTGACGTTCGACGAGTTCATGACCAGCATGGGAGGTTCGGGGAAGGACTTCGGGTCGATGAACATGGACGAGTTGCTGAAGAACATTTGGACCGCGGAGGAGGTTCAGACAATGGCGTCGGCGGGGGTCGCCGCCGACGACGGCGGCGCCGGAGTGAGCCACCTGCAGCGGCAGGGGTCGCTGACGCTGCCGCGGACGCTGAGCCAGAAGACCGTGGATGAGGTTTGGAAGGACATTTCGAAGGAGTACGGTGGGCACGGTGGGCCCCACTTGGCGCAGACGCAGCAGAGACAGCCAACGCTGGGAGAGATGACGTTGGAGGAGTTTTTGGTCAGAGCTGGGGTTGTTAGAGAAGATGCCAAGCCAAACGACGCCGTTTTTATGGATCTGGCTCGTGCAGGGAACAACAACGCTCTGGGGTTGGGGTTTCAGCAGATGAACAAGGTTGCTGCTGCTACCGGTTTGATGGGTAACCGGTTGAGCAATGATCCTCTGGTGGGTCTTCAGTCTCCTGCTAACTTGCCATTGAATGTTAATGGGGTGAGATCTTCCAATcagcagcagatgcagagtccacagtcccaacagcatcagcagcagcagcagATATTTCCCAAGCAGAGTGCTATGTCTTATGCAGCAGCTCAGATGCCTCAGGGAATGGTGAGGGGTGGGATGGTGGGGCTTGGTGGGGATCAGGGTTTGAGTGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCTGGGTCTGTTCATGTTACTACTGGCTCTCCTGCTGCGAACCAGATGTCCGGTGATAAGATGGCGAAGAGCAATGGTGATACCTCTTCCGTGTCCCCGGTTCCTTATGTCTTTAACGGTGGCCTGCGAGGGAGGAAGAGTGGGGGAGCGGTGGAGAAGGTGATTGAGAGGAGGCAGAGAAGGATGATAAAGAATAGAGAATCAGCTGCCAGGTCGCGGGCTCGCAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCTAAATTAAAAGAGGAGAACCAAGAACTTCAGAAGAAACAGGAAGAAATCATGGAAATTCAGAAAAATCAGGCTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGACGAACACAAACTGGGAGCGTATGCAATGCATGGTACCATGAGAATATGTTTCAGCACATTTCTCGCCACCATTGGTTAGACAATCTTCTTGTGCAGTAG 1335 0.4981 MNFKGFGNEAAGGDGGGGGGRAAGSFSLARQPSVYSLTFDEFMTSMGGSGKDFGSMNMDELLKNIWTAEEVQTMASAGVAADDGGAGVSHLQRQGSLTLPRTLSQKTVDEVWKDISKEYGGHGGPHLAQTQQRQPTLGEMTLEEFLVRAGVVREDAKPNDAVFMDLARAGNNNALGLGFQQMNKVAAATGLMGNRLSNDPLVGLQSPANLPLNVNGVRSSNQQQMQSPQSQQHQQQQQIFPKQSAMSYAAAQMPQGMVRGGMVGLGGDQGLSVQGGGIGMVGLAPGSVHVTTGSPAANQMSGDKMAKSNGDTSSVSPVPYVFNGGLRGRKSGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELQKKQEEIMEIQKNQAKEMMNLQREVKRRRLRRTQTGSVCNAWYHENMFQHISRHHWLDNLLVQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00450 444 SMART brlzneu 337 402 IPR004827 GO:0003700|GO:0006355
Cca07g00450 444 Pfam bZIP transcription factor 341 393 IPR004827 GO:0003700|GO:0006355
Cca07g00450 444 CDD bZIP_plant_BZIP46 341 395 - -
Cca07g00450 444 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 17 418 IPR043452 GO:0003700|GO:0045893
Cca07g00450 444 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 17 418 - -
Cca07g00450 444 Gene3D - 339 396 - -
Cca07g00450 444 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 344 359 IPR004827 GO:0003700|GO:0006355
Cca07g00450 444 SUPERFAMILY Leucine zipper domain 341 390 IPR046347 GO:0003700|GO:0006355
Cca07g00450 444 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 339 390 IPR004827 GO:0003700|GO:0006355
Cca07g00450 444 Coils Coil 357 394 - -
Cca07g00450 444 MobiDBLite consensus disorder prediction 213 242 - -
Cca07g00450 444 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00450 Cca-Chr7 5953719 5958669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00450 16 417 bZIP Transcription Factor Family AT1G49720 48.418 3.83e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca07g00450 bZIP_1 4.3e-13 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00450 07 5953719 5958669 Cca07g00450 07 5953719 5958669 ECH