Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00443 ATGCTTTTCAGTCTGGTTGGAGATTTTGGGTTCGACCCACTTGGGCTTGCAGAGGATCCAGAAAGCTTAAGGTGGTATGTGCAGGCAGAGTTGGTTCATTCTCGCTTTGCAATGCTTGGGGTTTTGGGAATTCTTGTGACAGATCTACTTCGCGTCACAGGAATTAGTAAGATACCAGTTTGGTTTGAAGCTGGTGCAGTAAAATACGACCTTGCCAATACAGAGACACTCTTCCTTGTTCAACTAATACTGATGGGGTTTGTCGAAACAAAAAGGTACATGGATTTCGTTAGTCCTGGATCTCAAGCTAAAGAGGGGTCCTTCTTTGGATTGGAAGCTTCACTGGAAGGCTTAGAGCCAGGGTATCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAATTCTCATGATTGGAAGCTTAAAGAGATCAAAAATGGGCGACTTGCAATGGTGGCAATGCTTGGCATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGATAACCTCGTGGAGCATCTTTCGAATCCATGGCATAAAACTATTATTCAGACCCTTGCGAGTTCTAGTTCGTAG 594 0.4428 MLFSLVGDFGFDPLGLAEDPESLRWYVQAELVHSRFAMLGVLGILVTDLLRVTGISKIPVWFEAGAVKYDLANTETLFLVQLILMGFVETKRYMDFVSPGSQAKEGSFFGLEASLEGLEPGYPGGPLLNPLGLAKDIKNSHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00443 197 Gene3D Chlorophyll a/b binding protein domain 3 185 - -
Cca07g00443 197 SUPERFAMILY Chlorophyll a-b binding protein 4 194 - -
Cca07g00443 197 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 194 IPR001344 GO:0009765|GO:0016020
Cca07g00443 197 Pfam Chlorophyll A-B binding protein 4 165 IPR022796 -
Cca07g00443 197 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 4 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00443 Cca-Chr7 5864753 5866556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00443 4 192 Chloroplast and Mitochondria Gene Families AT3G61470 46.842 4.59e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00443 K08911 - gmx:100804934 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00443 07 5864753 5866556 Cca07g00443 07 5864753 5866556 ECH