Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00427 ATGATGACCCCCGCCGCCGCCGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCACCGCCGCCGCCCCAGCCCTACATGGCTTACCACCAGTACCAGCAGCAGCTACCGCACGTGCCGCCGCCGCACGCGCACCATCAGGGATCCACCCCCGAGAACAAGACAATCTGGGTCGGAGATTTGCACCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAAGGTTATGGATTTGTGGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATACTGATGCCTAACACAGAGCAATCTTTCCGCCTGAACTGGGCAACATTTAGCACTGGAGACAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAGTGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCTACTCCTAGGAAAACTTCTGGCTATCAACAAGGTACCCAATCAAATGGCACATCCAACCAGTCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTGAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACGATTGGCAAACAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGAGATTTTGGCAGTCCCTGGAGTGGGGCGTATTATGGGGGAGCCGTGTATGATGGTTATGGATATGCTTTGCCACCTCCTCATGACCCGAGCATATATGCTGCTGCTTATGGAGCTTACCCTGTTTATGGAGGACACCAACAACAAGTAAGCTGA 1158 0.4715 MMTPAAAAMVMQHHMMPPQHYAPPPPQPYMAYHQYQQQLPHVPPPHAHHQGSTPENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQSFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGTQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWSGAYYGGAVYDGYGYALPPPHDPSIYAAAYGAYPVYGGHQQQVS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00427 385 SUPERFAMILY RNA-binding domain, RBD 243 355 IPR035979 GO:0003676
Cca07g00427 385 SMART rrm1_1 58 133 IPR000504 GO:0003723
Cca07g00427 385 SMART rrm1_1 256 323 IPR000504 GO:0003723
Cca07g00427 385 SMART rrm1_1 151 225 IPR000504 GO:0003723
Cca07g00427 385 MobiDBLite consensus disorder prediction 226 255 - -
Cca07g00427 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 229 IPR000504 GO:0003723
Cca07g00427 385 CDD RRM1_SECp43_like 58 138 - -
Cca07g00427 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 327 IPR000504 GO:0003723
Cca07g00427 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 137 IPR000504 GO:0003723
Cca07g00427 385 SUPERFAMILY RNA-binding domain, RBD 134 244 IPR035979 GO:0003676
Cca07g00427 385 Gene3D - 137 239 IPR012677 -
Cca07g00427 385 CDD RRM2_SECp43_like 149 228 - -
Cca07g00427 385 MobiDBLite consensus disorder prediction 230 255 - -
Cca07g00427 385 CDD RRM3_NGR1_NAM8_like 254 325 - -
Cca07g00427 385 Gene3D - 240 357 IPR012677 -
Cca07g00427 385 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 384 - -
Cca07g00427 385 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 12 384 - -
Cca07g00427 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 221 IPR000504 GO:0003723
Cca07g00427 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 318 IPR000504 GO:0003723
Cca07g00427 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 127 IPR000504 GO:0003723
Cca07g00427 385 Gene3D - 56 136 IPR012677 -
Cca07g00427 385 SUPERFAMILY RNA-binding domain, RBD 21 137 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00427 Cca-Chr7 5651834 5655784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00427 59 334 Eukaryotic Initiation Factors Gene Family AT4G34110 28.975 5.89e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00427 - - gmx:100777830 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00427 07 5651834 5655784 Cca07g00427 07 5651834 5655784 ECH