LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g00414	ATGGCTATCCGCGTCACCTTCTCCTTCTCGGGCTACGTCGCCCAGAATCTCGTCTCCTCCGCCGGCGTGCGCGTCGCCAACTCGCGATGCGTCCAAGAATGCTGGATCCGCTCGCGCCTCTTCGGCGCCGCCCAGAAGCCGGATCTCGATTCTTCCGCCGGCGGAGTCCGCAATTTCGCCAGGCCCAGGCCCAGGCCCAACGCCTGCTGGGCCGGGTCCACTTATTCGACCCTTGCCGGGGACTTGGTCGGCGACGGGTGCAAGAGCCCAATTATCGTGGGCCTGATTTCGCTGGTGAAGTCAACGGCGGGTGTTTCTGGGTCATCCGCGGCGGCTACGGGCGTTTTGGGTATTTCGCCCTTTAAAACGACCTCGATCATTCCCTTCTTGGCCGGTTCCAAGTGGCTTCCTTGCAACGAGTCCGTTCCTGATCCCACCACGTGGGAGGTGGATAAAGGTGGCACGCCACACGTGGTTTCCAACGCCGATTCCAGCTTTGGGAAAAGTAGTTGGCTTTCGCGCTTGCTCAACGTCTGTTCCGAAGACGCAAAAGCTGCGTTCACTGCCGTTACCGTTAGTTTGCTCTTTAAGTCCTCCTTGGCTGAACCTAGGTCCATTCCCTCCTCTTCTATGTACCCTACTCTTGAAGTGGGTGACCGTGTTTTAACCGAAAAGGTTTCGTTCTTGTTCAGAAAGCCTGATGTTTCGGATATTGTGATTTTCAAAGCGCCTCCTTGTTTGGAGGAGTTTGGCTTTAGTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCTGGCGACACTGTTGAGGTTTCTGATGGGAAACTGCTGGTAAATGGTGTTGCTGAAGAACAGGAATTTGTGTTGGAGCCTCTTGCGTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTTATGGGAGACAATCGGAACCACAGCTTTGATTCTCATATCTGGTAA	972	0.5391	MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWIRSRLFGAAQKPDLDSSAGGVRNFARPRPRPNACWAGSTYSTLAGDLVGDGCKSPIIVGLISLVKSTAGVSGSSAAATGVLGISPFKTTSIIPFLAGSKWLPCNESVPDPTTWEVDKGGTPHVVSNADSSFGKSSWLSRLLNVCSEDAKAAFTAVTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKVSFLFRKPDVSDIVIFKAPPCLEEFGFSSSDVFIKRIVAKAGDTVEVSDGKLLVNGVAEEQEFVLEPLAYEMDPMVVPEGYVFVMGDNRNHSFDSHIW	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g00414	323	Pfam	Signal peptidase, peptidase S26	183	323	IPR019533	GO:0004252\|GO:0006465
	Cca07g00414	323	Gene3D	Umud Fragment, subunit A	208	323	-	-
	Cca07g00414	323	TIGRFAM	sigpep_I_bact: signal peptidase I	186	321	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca07g00414	323	ProSitePatterns	Signal peptidases I signature 3.	307	320	IPR019758	GO:0004252\|GO:0016021
	Cca07g00414	323	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	199	215	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca07g00414	323	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	302	321	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca07g00414	323	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	258	270	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca07g00414	323	CDD	S26_SPase_I	202	323	IPR019533	GO:0004252\|GO:0006465
	Cca07g00414	323	PANTHER	SIGNAL PEPTIDASE I	1	323	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca07g00414	323	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	323	-	-
	Cca07g00414	323	ProSitePatterns	Signal peptidases I serine active site.	208	215	IPR019756	GO:0004252\|GO:0016021
	Cca07g00414	323	SUPERFAMILY	LexA/Signal peptidase	200	323	IPR036286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g00414	Cca-Chr7	5475229	5477791	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g00414	211	320	MADS-box Gene Family	AT1G29960	30.357	2.33e-06	44.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g00414	K03100		-	gmx:100817525	541.191

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca07g00414	07	5475229	5477791	Cca07g00414	07	5475229	5477791	ECH