Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00412 ATGACCTCAAGCTTCTTTCTATTGCTTTCCTTATTCCTCCTCTCATCATCATGTACCTCCTACGCACTTTCGAACGTTGAAGCCTCTTTAATAGCTCGTCGCCAATTGCTACACTTGCATGAGAATGAGGATTTACCGGACAACTACGTAGATAACTATCAAACAAATCTAACCTTCTCCAATCCTAGACTCAAACGTGCATACATTGCACTCGAGGCATGGAAAAAAGCAATCTACTCAGACCCATCAAATGCCACAGGGGATTGGGTGGGCCCAAAAGTTTGCTCCTACAAAGGAGTTTATTGTCAAAAGGCCCTAGATGACATAAAGGTCGATGTTGTGGCTGGGATTGATCTTAACCATGCAGACATCGCAGGTTACATTCCCTCTGAATTTGGTTTGTTAACCGACCTTGCACTTTTGCATATAAACTCGAACAGGTTTTGTGGGATTCTCCCAAAGAGCTTTTCAAAGCTAAAGCTATTGTATGAGTTAGACATCAGCAACAACCGTTTTGTTGGGACATTCCCAGAGCCCGTGCTTTCAATTCCAGACCTTAAATTCCTTGACATCCGGTTCAACGAATTCGAAGGGACATTGCCTTCGGAGCTTTTCAACAAAACCCTAGATGCTATCTTTTTGAACAACAATAGATTCACCTCCACAATTCCTCAGAACTTGGGATCTTCTCCAGCTTCGGTTGTGGTTTTGGCAAACAACGATCTAACAGGATGCGTTCCTTCGAGCGTTGGCGACATGACAAAGACGTTGAACGAGTTTGTTTTGATCAACAACAACCTCAGTGGTTGCTTACCCGCGGACATTGGAAAGCTGAAACAAGTTTCTGTGTTTGACATCAGCGGGAACAACTTCGTTGGCGTGTTGCCAGAGACCTTTAACGAGCTTCAAAGCGTGGAGCAGTTTTCCATTGCGCACAACAAGCTCACTGGTGTCATCCCACAAAAAGTGTGTAGCTTGCCCAAGTTGGTCAACTTCACGTTCTCTAATAACTTCTTCGACACTGAGGAACAAGGTTGTGTTCCTTCTAAGAAAGACAAAGATTTTGTGTTTGATGATGAGAAAAACTGCATACCCGATAGACCAAAGCAAAAGGATTTAGACGATTGCAATGAGGTGTTAAGCAATCCTGTGGATTGTAGCAAAGCGCAATGTGGAGGTGGTAATAGCCCCTCTCCATCTGTGCCAAAATCTTCGAATCCTCCACAACCTCAGAAGCAAACACCACCAGCTCAACCTACTACTCCTCCAACACCTAAGCCACAACCTTCAACACCAAAGCCACAACCACCTACACCACCAGAGGATGATCCTCACGAGGAATCACCCCGAACACGACAAAGATCTCCACCACCACCACCTGTTCAATCTCCTCCACCACCACCAGTTCAATCTCCTCCTCCACCGGTTCACTCTCCACCACCACCAGTTCAATCTCCTCCTCCACCGGTTCACTCTCCACCACCACCAGTTCAATCTCCTCCTCCACCGGTTCATTCTCCACCACCACCTGTTCTGTCTCCTCCTCCACCAGTTCACTCCCCACCACCACCTGTTCAGTCTCCTCCTCCACCGGTTCACTCTCCACCACCACCGGTTCAATCTCCTCCACCACCAGTTCACTCTCCACCACCTCCTGTGTACTCTCCACCACCTCCTGTGTACTCTCCACCACCACCAGTGCACTCTCCACCACCTCCTACACAAGATATTCTCCTTCCCCCTAACTTTGGCTCTTCTTATGCTTCACCCCCTCCACCTACCATTTCCGGCTACTAA 1797 0.4736 MTSSFFLLLSLFLLSSSCTSYALSNVEASLIARRQLLHLHENEDLPDNYVDNYQTNLTFSNPRLKRAYIALEAWKKAIYSDPSNATGDWVGPKVCSYKGVYCQKALDDIKVDVVAGIDLNHADIAGYIPSEFGLLTDLALLHINSNRFCGILPKSFSKLKLLYELDISNNRFVGTFPEPVLSIPDLKFLDIRFNEFEGTLPSELFNKTLDAIFLNNNRFTSTIPQNLGSSPASVVVLANNDLTGCVPSSVGDMTKTLNEFVLINNNLSGCLPADIGKLKQVSVFDISGNNFVGVLPETFNELQSVEQFSIAHNKLTGVIPQKVCSLPKLVNFTFSNNFFDTEEQGCVPSKKDKDFVFDDEKNCIPDRPKQKDLDDCNEVLSNPVDCSKAQCGGGNSPSPSVPKSSNPPQPQKQTPPAQPTTPPTPKPQPSTPKPQPPTPPEDDPHEESPRTRQRSPPPPPVQSPPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVLSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVYSPPPPVYSPPPPVHSPPPPTQDILLPPNFGSSYASPPPPTISGY 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00412 598 PRINTS Proline rich extensin signature 395 416 - -
Cca07g00412 598 PRINTS Proline rich extensin signature 419 435 - -
Cca07g00412 598 PRINTS Proline rich extensin signature 436 453 - -
Cca07g00412 598 PRINTS Proline rich extensin signature 454 479 - -
Cca07g00412 598 MobiDBLite consensus disorder prediction 453 578 - -
Cca07g00412 598 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 3 527 - -
Cca07g00412 598 SUPERFAMILY L domain-like 108 341 - -
Cca07g00412 598 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 527 - -
Cca07g00412 598 MobiDBLite consensus disorder prediction 401 438 - -
Cca07g00412 598 Gene3D Ribonuclease Inhibitor 67 362 IPR032675 -
Cca07g00412 598 MobiDBLite consensus disorder prediction 386 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00412 Cca-Chr7 5427490 5431419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00412 22 481 Trihelix Transcription Factor Family AT4G33970 54.409 7.18e-170 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00412 - - gmx:100780677 617.846