Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00403 ATGGACGCTGCAGCGCTTGCCGTAGTTGGTATCTTACTATTAATATGTTACTTCATCAAACCGGCCACACCAGGTTCTGCGTGCAAGCCACCGGAAGCAGGCGGTGGCTGGCCTTTGATCGGGCATCTTCACCTATTTGGTGGCTCCGGTCAGCCTCTTCACGAAACCCTAGGGGCGCTGGCAGACAAGTACGGCCCAATATTCAGCATCCGAATTGGCGAGCCTCCATGCGAAGCCCTAGGAGCGTTGGCAGACAAGTACGGCCCAATATTCAGCATCCGAGTTGGAGTGCACCCAGCGGTGGTGGTGAGCTCTTGGGAGTTAGCCAAAGAGTGTTTCACCACTCACGACGTCGCTCTTTCCTCTCGTCCCAAATTCACCGCTGCAAAACTCTTGACATACGACTATGCTAGTTTCGCCTTCGCCGCTTATGGAGACTTCTGGCGTGAGATGCACAAGATAACGGTTTCCGAGTTGCTTTCGGCACGCCGCTTGGAACTGCTTCAAGGCATCAGAGATTCGGAGGTGCAGAGCGCGTTGAAAGAAGTGTACAGAGCGTGGGAGGAGAAAAGAGGTGGCTTGGTGGTGGAGATGAAGCAGTGGTTTGGAGACACGAGTTTGAACGTGATTCTGTGGATGGTTGCTGGAACGCGATACTGTGTTTCAAGTGTAGATGATGAGGAAAAGGTAAGGCGTGTTCGGAAGGTAATGAGAGAGTTCTTCCACTTGTTGGGATTGCTTGTGGTTGGTGACGCCATTCCCTTTCTGGGGTGGCTTGATTTGGGAGGTGAAGTGAAGCGGATGAAGAAAACGGCTATTGAAATGGATATCATCGTTTCTGAATGGTTAGAAGAACATCGACAGAGAAGAGAATCGGGTGAGAGTGAGACCAAAACAGAGCAAGACTTCATTGATGTGTTGCTGTCTGCCCTTGATGGCCTTGATGGTTATGATGCTGGTACTGTCATAAAAGCCACATGCTCGACACTAATTGCTGCGGCAACAGATACTACATCAGTTACCATGACTTGGGCACTATCGTTATTGTTGAATAATCGCAATGTCCTGAGGAAAGTTCAAGATGAACTAGATGTGCAAGTGGGCAAGGAAAGACTGGTGAATGAATCAGACATTAACAAATTAGTATACCTTCAAGCCGTAGTTAAAGAGACAATGAGATTGTATCCAGCTTCACCACTTCCTGGTCCACGTGAATTCACAAAAGATTGCACCTTAGGTGGCTACCATATCCAAGCAGGTACCAGATTTATTTTGAACGCTTGGAAGCTGCAAAGAGACCCAGGTGTATGGCCTGACCCATTAGAGTTTCAACCAGAAAAGTTTCTCACTACACACAAGGATGTGGATGTGAAGGGTAAACATTTTGAGCTACTTCCCTTTGGTGCTGGAAGAAGGTCGTGCCCTGGCATATCGTTTGGCCTTCAAATGACACTTTTGGCATTAGCTACTTTTTTGCAAGCATTTGAAATCACAACCCCAAACAATGCCCAAGTTGATATGAGTGTCACGGTTGGACTCACTGTCATCAAAACCACTCCACTTGAGGTTTTAGTCAAACCTCGTTTACCATATCAACTTCTCTCTATGGATGAAACTAAGGAAAATTCAGCACATTAA 1638 0.4744 MDAAALAVVGILLLICYFIKPATPGSACKPPEAGGGWPLIGHLHLFGGSGQPLHETLGALADKYGPIFSIRIGEPPCEALGALADKYGPIFSIRVGVHPAVVVSSWELAKECFTTHDVALSSRPKFTAAKLLTYDYASFAFAAYGDFWREMHKITVSELLSARRLELLQGIRDSEVQSALKEVYRAWEEKRGGLVVEMKQWFGDTSLNVILWMVAGTRYCVSSVDDEEKVRRVRKVMREFFHLLGLLVVGDAIPFLGWLDLGGEVKRMKKTAIEMDIIVSEWLEEHRQRRESGESETKTEQDFIDVLLSALDGLDGYDAGTVIKATCSTLIAAATDTTSVTMTWALSLLLNNRNVLRKVQDELDVQVGKERLVNESDINKLVYLQAVVKETMRLYPASPLPGPREFTKDCTLGGYHIQAGTRFILNAWKLQRDPGVWPDPLEFQPEKFLTTHKDVDVKGKHFELLPFGAGRRSCPGISFGLQMTLLALATFLQAFEITTPNNAQVDMSVTVGLTVIKTTPLEVLVKPRLPYQLLSMDETKENSAH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00403 545 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 84 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 108 129 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 SUPERFAMILY Cytochrome P450 35 77 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 PANTHER CYTOCHROME P450 FAMILY PROTEIN 75 533 - -
Cca07g00403 545 PANTHER CYTOCHROME P450 FAMILY PROTEIN 7 74 - -
Cca07g00403 545 PANTHER CYTOCHROME P450 82C3-RELATED 7 74 - -
Cca07g00403 545 PANTHER CYTOCHROME P450 82C3-RELATED 75 533 - -
Cca07g00403 545 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Cca07g00403 545 Gene3D Cytochrome P450 78 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 SUPERFAMILY Cytochrome P450 76 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 Gene3D Cytochrome P450 19 77 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00403 545 Pfam Cytochrome P450 79 520 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00403 Cca-Chr7 5334977 5337532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00403 31 534 Cytochrome P450 AT4G31940 48.748 8.06e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00403 - - gmx:100779080 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00403 07 5334977 5337532 Cca07g00403 07 5334977 5337532 ECH