Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00398 ATGCACCGGGAAAATCCTTTGTCGCAGTCAACAGTACCATTTACCTTCACAATCTTTGGTCTATTGTTATTTATCTTTGTTCTTTCAACCATATCAAGAAAGCGCAATGGTGCAACTAAAAAAGCACCTGCGCCACCAGAAGCTAGCGGTGCATGGCCTCTGATTGGCCACCTCCACCTCTTAGGTGGCTCAAAACCACCTCACGTGACGTTGGGCGACATGGCCGACAAATATGGCCCCGTCTTCACCTTGCGTCTTGGCACTCACAGAACCTTGATTGTCAGCAATTGGGAAATGGCCAAACAGTGCTTTACTGTCAGTGACAGAGCCTTCGCCAGCCGTCCAAAATCTCTAGCCTTTGAAGTTATGGGCTTCAACTTTTCCATGTTTGGGTTCAGTCCCTACGGTTCTTATTGGCGTCATCTACGCAAAATTGCCACGCTGGAGCTCTTCTCCGCTCAGCGGATAGAGATGCTCAAACACATGATGGAGTCAGAGGTGAAGGCATCAGTGAAAGATATTTGGCTGAAGAAGAAAAACAGCGCCTCCGAGAAGGTAGAGATTGAAATGAAGAAGTTGTTTGGAGACATAACGTTAAACGTTATTTTACGGGCGGTTGTTGGAAAACGCTTAGTTAGtgaagatggtgatgatgatgaagaGAGCCAACGGGTCCGCAAGGCGATGGGGGACTTTCTTGATCTCAGCGGGTCATTGGCTGTCTCTGATGTTATTCCGTGTTTGAGATGGTTGGATTTGGATGGACAAGAGAAGGAGATGAAGAGAACAGCGGAAGAGTTAGATGAGATCGCTCAAGCTTGGCTCGAAGAACACAGACGCAACAGGAATAGCGGTTCTGTTACGCTTACGCACGATTTCATGGACGTGCTTCTTGAACTTGCTGATCAGGGTGAAGAGTTTGACGGTCATGATGTTGATACCACAATCAAAGCTACATGCCTGGTCTTAATTATAGCTGGATCTGATAATACAATAACGACATTGACTTGGGCTCTATCATTACTTCTCAATAATCGTGAAGTCTTAAATAAGGTTATTCATGAATTAGAGACAAAAATTGGGAAGGAAAAAATGGTAGAAGTATCAGACTTGAAGAAACTAGAGTATCTCCAATGTATCATTAAGGAAACATTACGTTTGTACCCACCTGCACCACTTAATGTGCCACATGAGTCTATGGAAGACTGCATTGTGGGAGGATATCATGTACCAGCTGGGACGCGTCTATTGACTAACATTTCAAAACTTCAACGAGATTCCTCATTATATTCTAATCCCTTAGAATTTTGTCCAGAGAGATTTTTAACAACCCACAAGGATGTGGATGTCAAGGGCCAACATTTTGAATTGATTCCATTTGGTGCGGGCAGAAGAATGTGTCCTGGAGTCTCTTTTACTCTTCCAGTAATACAACTAGCACTTGCTACTATATTGCACGAGTTTCACATTGTAACTCCTAATGAAAGACCTGTCGAATTGCTTGAACAAAATGGACTACGAACCATCAAGGCCTCTCCACTTCATGTCATTCTTACACCACGATTATCTGCTCATATTTATGATGAAATTTAA 1593 0.4288 MHRENPLSQSTVPFTFTIFGLLLFIFVLSTISRKRNGATKKAPAPPEASGAWPLIGHLHLLGGSKPPHVTLGDMADKYGPVFTLRLGTHRTLIVSNWEMAKQCFTVSDRAFASRPKSLAFEVMGFNFSMFGFSPYGSYWRHLRKIATLELFSAQRIEMLKHMMESEVKASVKDIWLKKKNSASEKVEIEMKKLFGDITLNVILRAVVGKRLVSEDGDDDEESQRVRKAMGDFLDLSGSLAVSDVIPCLRWLDLDGQEKEMKRTAEELDEIAQAWLEEHRRNRNSGSVTLTHDFMDVLLELADQGEEFDGHDVDTTIKATCLVLIIAGSDNTITTLTWALSLLLNNREVLNKVIHELETKIGKEKMVEVSDLKKLEYLQCIIKETLRLYPPAPLNVPHESMEDCIVGGYHVPAGTRLLTNISKLQRDSSLYSNPLEFCPERFLTTHKDVDVKGQHFELIPFGAGRRMCPGVSFTLPVIQLALATILHEFHIVTPNERPVELLEQNGLRTIKASPLHVILTPRLSAHIYDEI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00398 530 Gene3D Cytochrome P450 29 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 Coils Coil 339 359 - -
Cca07g00398 530 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 Pfam Cytochrome P450 48 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PANTHER CYTOCHROME P450 44 527 - -
Cca07g00398 530 SUPERFAMILY Cytochrome P450 50 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca07g00398 530 Coils Coil 253 277 - -
Cca07g00398 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Cca07g00398 530 PANTHER CYTOCHROME P450 82C3-RELATED 44 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00398 Cca-Chr7 5229525 5231999 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00398 16 527 Cytochrome P450 AT4G31940 48.467 2.00e-175 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00398 - - gmx:100787630 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00398 07 5229525 5231999 Cca07g00398 07 5229525 5231999 ECH