LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g00394	ATGGCATTAATCACCTCTGTGCCTCCTTTGCAACAACTACACGCTTCATTCAAGGCAAAGCCCTGCAACAACTTGAAGCGCTCCTCCATGCGTTATTTTACAGCCAAAGCCTCAGTCTCCGAAACGGCGTCGTCGCCAGAGCGCGAGACCACCCAGCTTCCCATGCGCGAAATCCCCGGAGATTACGGTCTCCCATTCATAGGACCAATCAAAGACCGCCTCGACTATTTCTACAACCAAGGACGCGACAACTACTTCAAATCCCGCCAACAAAACTACAACTCCACCGTTTTCCGCGCCAACATGCCACCTGGCCCCTTCATCGCCTCCAACCCAAACGTCATCGTTTTGCTCGACGCCAAAAGCTTCCCCGTCCTCTTCGACGTCACCAAAGTCGAGAAGCGCGACGTCTTCACCGGCACCTTCATGCCCTCCACCGAACTCACCGGCGGTTACCGAATCCTCTCCTACCTCGACCCCTCCGAGCCTAAACACGAAAAACTCAAGCGCCTCCTGTTCTTCCTCCTCAAGTCCCGAAGCAGCCACGTCATCCCCGAGTTCCATTCCAGCTACGCCACCCTCTTCGACACCTTGGAGAACGACCTCGCTTCCAAAGGAAAAGCTAGTTTCGCTGACGCCAACGACCAAGCAGCGTTTAACTTCCTCGCTCGCGCGCTTTATGCCACAAACCCCTCCGACACACAGCTCGGAAGCGACGGCCCAAGCATAATCCAGAAATGGGTTCTGTTCCAGCTTGGCCCAATTATGGTATTGGGCCTGCCCAAATTCCTCGAAGATCCCACTCTCCACACTTTCCGTATCCCCGCTTTTCTCATCAAGAAAGATTACCAGAGGCTCTACGATTTCTTCTACGTGTCCGCCGGGTCCGTACTTAACGAAGCGGTGCGTTTCGGCATCCCCAGAGAAGAAGCGTGCCACAACCTTTTATTCGCCACGTGCTTCAACTCGTTTGGCGGCATGAGGATATTTTTCCCCACCATACTGAAGTGGGTTGCACGTGCGGGTGTCGAGCTTCACGCGCGGCTAGCGGAGGAGGTCAGGGCCGCCGTTAAGTCTAGCGGCGGGAAGGTGACGATGGCGGCGATGGAAATGATGCCGTTGATGAAGTCGGTGGTTTACGAGGCGTTTCGGATCGAACCGCCGGTGGCGCTGCAGTACGGGAAGGCGAAGAGGGACTTGGTGATCGAGAACCATGAGAATTCATTTTCGGTGAAGAAAGGGGAAATGCTGTTTGGGTTTCAACCCTTTGCGACGAAAGATCCGAAGATATTTGAGAATGCGGAGGAGTTTGTGGGGGACCGGTTCGTGGGGGAGGGAGAGAAGCTGTTGAAGTACGTGCTTTGGTCGAATGGTCCCGAGACGGAGGAAGCCACCCTTGGGAACAAGCAATGTGCGGGTAAGGATTTCGTGGTTTTGTTTTCAAGGCTTCTGGTGGTGGAGTTGTTTCTTCGTTATGATTCGTTTGATGTTCAAGTTGAGACCTCGCCCTTGGGTTCTGCCGTCATTTTCACGTCTCTCAAGAAAGCAAGCTTTTAG	1557	0.5389	MALITSVPPLQQLHASFKAKPCNNLKRSSMRYFTAKASVSETASSPERETTQLPMREIPGDYGLPFIGPIKDRLDYFYNQGRDNYFKSRQQNYNSTVFRANMPPGPFIASNPNVIVLLDAKSFPVLFDVTKVEKRDVFTGTFMPSTELTGGYRILSYLDPSEPKHEKLKRLLFFLLKSRSSHVIPEFHSSYATLFDTLENDLASKGKASFADANDQAAFNFLARALYATNPSDTQLGSDGPSIIQKWVLFQLGPIMVLGLPKFLEDPTLHTFRIPAFLIKKDYQRLYDFFYVSAGSVLNEAVRFGIPREEACHNLLFATCFNSFGGMRIFFPTILKWVARAGVELHARLAEEVRAAVKSSGGKVTMAAMEMMPLMKSVVYEAFRIEPPVALQYGKAKRDLVIENHENSFSVKKGEMLFGFQPFATKDPKIFENAEEFVGDRFVGEGEKLLKYVLWSNGPETEEATLGNKQCAGKDFVVLFSRLLVVELFLRYDSFDVQVETSPLGSAVIFTSLKKASF	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g00394	518	Gene3D	Cytochrome P450	49	518	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca07g00394	518	Pfam	Cytochrome P450	344	447	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca07g00394	518	PANTHER	CYTOCHROME P450 26	38	516	-	-
	Cca07g00394	518	PRINTS	E-class P450 group IV signature	372	388	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca07g00394	518	PRINTS	E-class P450 group IV signature	425	443	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca07g00394	518	PRINTS	E-class P450 group IV signature	471	489	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca07g00394	518	PANTHER	ALLENE OXIDE SYNTHASE 1, CHLOROPLASTIC-LIKE	38	516	-	-
	Cca07g00394	518	SUPERFAMILY	Cytochrome P450	52	498	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g00394	Cca-Chr7	5160220	5162573	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g00394	1	518	Cytochrome P450	AT5G42650	62.023	0.0	656

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g00394	K01723		-	gmx:100807192	855.129

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca07g00394	07	5160220	5162573	Cca07g00394	07	5160220	5162573	ECH