Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00385 ATGCATTTACTCCGGCCGCCTCCAAATGTCACTCATGAATCATATTACCCTCTCTCTTCACTATTGACTATTGACTTCTCCAACCGATCCATTCTTCTCTCAATTTTTCGCTTTCCACAGATGGCAAGTGGGTTTGGGGAATCAGCAGGCAGGTCACCCCCAAGCCCTTCCTACTTCAGCAACAATAATAACAATGATGCTGCCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGACCCCATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACCTTCACTCGCAGTCGCGAGAATGCCCTGTGTGCAAGGCTCTTGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACTTCGACTGATCCAAGATCAAAATCTATTCCAGGTGTTAATATCCCGCACCGTCCGGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCCGAAACAAATCATTTTCATCAACATGGATTTGGATTTATGGGTGGCTTGGGAGGTGGATTTGCACCACCCCCGGTGGCAACCACAAGATTTGGGAATTTCGCATTGTCTGCGGCTTTTGGTGGTTTTATTCCGTCCTTGTTCAACTTTCAGTTGCATGGTTTTCATGATGGGGCCATGTATGGGGGAGCAGCTGGTTTCCCACATGGATTTTCTCATTCATTTCATGGTATTGGGTACAATCTAAGACAGCTAGCAGAATCAGACTTCTTCTCTGATAGATTTTCTGGCACTTGA 771 0.4617 MHLLRPPPNVTHESYYPLSSLLTIDFSNRSILLSIFRFPQMASGFGESAGRSPPSPSYFSNNNNNDAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHLHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGGFAPPPVATTRFGNFALSAAFGGFIPSLFNFQLHGFHDGAMYGGAAGFPHGFSHSFHGIGYNLRQLAESDFFSDRFSGT 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00385 256 SMART ring_2 72 112 IPR001841 -
Cca07g00385 256 Pfam Zinc finger, C3HC4 type (RING finger) 72 112 IPR018957 GO:0046872
Cca07g00385 256 MobiDBLite consensus disorder prediction 126 158 - -
Cca07g00385 256 CDD RING-HC_AtRMA_like 70 114 - -
Cca07g00385 256 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Cca07g00385 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 42 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cca07g00385 256 PANTHER OS12G0636000 PROTEIN 42 237 - -
Cca07g00385 256 ProSiteProfiles Zinc finger RING-type profile. 72 113 IPR001841 -
Cca07g00385 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 126 IPR013083 -
Cca07g00385 256 SUPERFAMILY RING/U-box 66 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00385 Cca-Chr7 5043900 5046163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00385 70 235 C3H Transcription Factor Family AT1G19310 69.412 2.72e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00385 K10666 - gmx:100794086 348.977