Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00375 ATGGCGGAAACTCAGAATCCTTCACCACTGATAGATTCTTCAGCGTTGCCTCAGGCACTGGCAGTGCCACCTCCCAAAAAGAAGCGAAGCCTCCCTGGAATGCCAGATCCAGATGCCGAGGTGATTGCTTTGTCACCGAAGACGCTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGCGACCAGAACCTTCAGCTTCACCGGCGCGGCCACAACCTGCCGTGGAAGCTGCGGCAGCGAGGGAGCAAGGAGCCGCGCAAGAAGGCGTACGTGTGTCCCGAGCCTTCCTGCGTCCACCACAACCCCGCCAGGGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAAAAGTGGCAATGCGAACGCTGCTCTAAGAAGTACGCCGTTCACTCCGATTGGAAGGCGCACATGAAGACTTGCGGCACGCGAGAGTACCGTTGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTCTTAGCGCAAGAGAGTGccatggcccaggtccaggtccaagcccaagcccaagGTGCTGGCAACAGCAACAGCAACAGCAACGATGTTGTGGCTTCTTCGCCGCCTACGCCTCCACTTACTCCCTCTGCGTCTGTCGTGTCCCCAACCTTGTCCATTCAGAGCTCAGAAATTCCGGAAAACCCGACGAAGCTGTCGCCGACATCTTCTAGCGCAACGTGTTTCGTGAACGCCGTGACAAGCACCGCCACTGTGTTTGCAAGCGTGTTGGCATCGCCAGCAACAACCGTGACAACTCCTTCACAATCACCATCATCAGCATGCTCGTTCTCGAACCTCATGTCAAACTTGGAGTGCCCCAACACCACAtccctctccctctccacaccactctatctctccAACAACGACCCTCCCCAATACACTGCGTCTCCCCAACCTGCATTATCCGCCACTGCACTGCTCCAAAAGGCAGCACAAATGGGTGCATCAAACGCGTCCTTGCTTCGTGGTTTAGGCTTAGCAACAACATCATTGTCGTCGTCCTTCGGGAAAGACGAGGGTGTTAACACAAGTGCCGCAACCTCACTACAATGGAACGGCCAAGTGAAGCAAGAGAATGAACCCCTCGGGCTTGGGCTTCCCTGTGGGAGTGGGGGTGTCACCGATGTGATGATGGGCCCTTCCGCCCCATTCGTGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCATCGGTGGTGGAGCAAGCAGGGGTGGTCTCTCTGCTTTGCTTAGCTCTTTCGGAGGGAACTTTGATGCATCACCCGGTGAGGGAGGAGTTCACCACCGCTAG 1377 0.5367 MAETQNPSPLIDSSALPQALAVPPPKKKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWQCERCSKKYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESAMAQVQVQAQAQGAGNSNSNSNDVVASSPPTPPLTPSASVVSPTLSIQSSEIPENPTKLSPTSSSATCFVNAVTSTATVFASVLASPATTVTTPSQSPSSACSFSNLMSNLECPNTTSLSLSTPLYLSNNDPPQYTASPQPALSATALLQKAAQMGASNASLLRGLGLATTSLSSSFGKDEGVNTSAATSLQWNGQVKQENEPLGLGLPCGSGGVTDVMMGPSAPFVGQPMTRDLLGLSIGGGASRGGLSALLSSFGGNFDASPGEGGVHHR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00375 458 Pfam Zinc-finger of C2H2 type 55 77 - -
Cca07g00375 458 MobiDBLite consensus disorder prediction 224 249 - -
Cca07g00375 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Cca07g00375 458 SMART c2h2final6 55 77 IPR013087 -
Cca07g00375 458 SMART c2h2final6 96 126 IPR013087 -
Cca07g00375 458 SMART c2h2final6 131 151 IPR013087 -
Cca07g00375 458 MobiDBLite consensus disorder prediction 1 38 - -
Cca07g00375 458 Gene3D Classic Zinc Finger 35 102 - -
Cca07g00375 458 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 14 449 - -
Cca07g00375 458 SUPERFAMILY beta-beta-alpha zinc fingers 54 152 IPR036236 -
Cca07g00375 458 MobiDBLite consensus disorder prediction 194 249 - -
Cca07g00375 458 Gene3D Classic Zinc Finger 109 189 - -
Cca07g00375 458 MobiDBLite consensus disorder prediction 194 214 - -
Cca07g00375 458 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Cca07g00375 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00375 Cca-Chr7 4859626 4862694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00375 26 424 IDZ Gene Family AT5G66730 49.891 1.03e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca07g00375 zf-met 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00375 K25869 - gmx:100818095 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00375 07 4859626 4862694 Cca07g00375 07 4859626 4862694 ECH