Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00357 ATGGGTTGGACACGAGAAGAGAATAGACGTTTTGAGGATGCTCTTGCAGTTCATGGCCCTGAAGACCCCAATCGGTGGCAACATGTAGCAAACGCCGTCGGTGGAAAATCCGTCGAAGAGGTGAAGATGCACTATGAGATCCTCAAGGAAGATGTCATTCGAATAGAGCGTGATCAAATCCCACTACCCAGGTACAGAGGTTCTCCCATCAACGGAAGACAGATTGACAATGAGCAAAGCAGGCGAATGAGGAATCTAAGTCTCCGATGA 270 0.4852 MGWTREENRRFEDALAVHGPEDPNRWQHVANAVGGKSVEEVKMHYEILKEDVIRIERDQIPLPRYRGSPINGRQIDNEQSRRMRNLSLR 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00357 89 MobiDBLite consensus disorder prediction 65 89 - -
Cca07g00357 89 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 66 - -
Cca07g00357 89 CDD SANT 3 49 IPR001005 -
Cca07g00357 89 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Cca07g00357 89 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Cca07g00357 89 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Cca07g00357 89 Gene3D - 2 51 - -
Cca07g00357 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Cca07g00357 89 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 66 IPR044636 GO:0003700
Cca07g00357 89 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Cca07g00357 89 SMART sant 3 51 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00357 Cca-Chr7 4688532 4688998 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g00357 Myb_DNA-binding 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00357 - - gmx:100789698 157.532