Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00333 ATGTCCAACTCCATCACCCATCAAAACCAATTTGAGAACCAAGAGCTTGATGCTTATGCCTCTTCCATGAGGCACAACAATGCATTTTCTGAGGCCTTGGGAGTATTTCCCAGCATTGGAGTAGCTGAAGGCTCTGAGATCAGCCACACAAGGCATCTGATGGATCTTCTTGGTGCAGCAGCAAATGAGAGCATTCATCACCAAACTCAAGGGCTTTCTCTTTCTTTAGGCTCTCACATGCATCAAAGACCCTTAAACCCTGCTCTCATGAACCCCAATTACTTCATCTCTGGACAAGAGCCACGTGAGGCTTGTAATCCACCAGTGGAACCTCAGAATCTAACCAGTGACTACTTTTTCAACGCTGCAAGTGCCTCTTTTGCTTCCTCTTCTGCCCCATTAAACCGTTCTCCTTCCACCTCCTATGCTGCTGAGTCTTTTGTTTCTGTCATTGGGAACTCGAGGTACCTCAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTTGATAGAATCAATGAGAAGTATGCTGAGAAGTTGTTTCGTGGGGGAAGAGGAGGTGCTAGGACTCTCTCCTCGGAGTTGAAGGCAGAGTTGAGGAATAATGGACCCTTATTGGCTGACAAACATGAACATCAAATCAAAATTGCAAGGTTGATTTCTTTGTTAGATGAGGTTGAGGCCAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTATCATCCTTTGAAATGATAGCTGGTTTGGGAGCTGCCAAGTGTTACACTGCTTTGGCACTCCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGCGGCTTGTCTCAACTAAGCTTGTTTGATAGAGACAGTAGACAGAGTAGAATGTCTCTCCAACAACTTCGTGTGATCCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGCTTGCCTGAAACCTCTGTGGCAATTCTTCGCTCATGGCTCTTTGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCAAGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTCTTCTGAAGACTCCAACCCGGCTGGTAACAACTTCTTGACGAGGGAAGATACCACAGATTGTGTAGAGGATTGA 1290 0.4434 MSNSITHQNQFENQELDAYASSMRHNNAFSEALGVFPSIGVAEGSEISHTRHLMDLLGAAANESIHHQTQGLSLSLGSHMHQRPLNPALMNPNYFISGQEPREACNPPVEPQNLTSDYFFNAASASFASSSAPLNRSPSTSYAAESFVSVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGGRGGARTLSSELKAELRNNGPLLADKHEHQIKIARLISLLDEVEARCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDSRQSRMSLQQLRVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAGNNFLTREDTTDCVED 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00333 429 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 8 411 - -
Cca07g00333 429 SUPERFAMILY Homeodomain-like 339 400 IPR009057 -
Cca07g00333 429 SMART HOX_1 333 397 IPR001356 GO:0003677
Cca07g00333 429 CDD homeodomain 333 394 IPR001356 GO:0003677
Cca07g00333 429 ProSiteProfiles 'Homeobox' domain profile. 352 393 IPR001356 GO:0003677
Cca07g00333 429 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 411 - -
Cca07g00333 429 MobiDBLite consensus disorder prediction 402 429 - -
Cca07g00333 429 Gene3D - 328 408 - -
Cca07g00333 429 Pfam Associated with HOX 150 281 IPR006563 -
Cca07g00333 429 SMART prehox3 145 283 IPR006563 -
Cca07g00333 429 Coils Coil 215 235 - -
Cca07g00333 429 Pfam Homeobox KN domain 350 389 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00333 Cca-Chr7 4438861 4440420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00333 67 408 Homeobox Transcription Factor Family AT1G19700 42.541 3.92e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca07g00333 POX 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00333 - - gmx:100792161 724.931