Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00332 ATGTATCCCAACCAAGCCTTTTCTTCAGGATCTTATGCAGAGATGATGTCTGGGACCTCACTGTTACCTCATGACTACAGTGAATCTGTAGGAGGACAAAATGAGGTGAAGTTTATCACAGCTATGGGTGGCACAGTGACTATGCAATCTATTAATGGACATTCCAATGCTGCAACTGGTGATCCTGCATGCAACTCTTATGCTGGAGATTCCCATGTTGTTTCAAGGACACAAATGGGAATTGTAGATAGTGAGCAAAACATGCAGTGTCATGGCTTATCTCTCAGTCTCGGGACAATCATGCCTTCTACTTCATCTGTCCCTCCATTTCAATACCAATATCACGACACAGGTCTCTTGCCGCTAATGACTGATTTTCCAAACCTCAAGGGAACTATGTCTCTCAAAGATGATGAGGCTAATAACCTACATAAGGAGTTGAGAAGTGCTGAATGCATGGCATCTGTGTCTTCTGGAGGCTTTCATGACATGATCAAAAAGGAGGGTTTTTACAACCCCCACACCTCAATGTGTCTTAAAGAAGTTCCCTCTGATCCATGCCTTCAAGGATCACAAGGTTACTCAAACAGTATTTTGAACTCCCAATACCTTAAGGAAGCACAGGAGTTGCTTGATGAAATAGTTAGTGTCCGAAAGGCTTTGAAGCAACCTGGAATGGAAAAACAAGAGAATTGCCGTGACATTGGATTAGATGGCTCTAAAGATTCGGATGGGAAATCTACCGGTGCTAATGGTTCTACTGCCAATGCTTCTATTGAACTATCACCTGGAGAACGGCAGAACTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGCTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATCGTGGTGTCATCTTTTGACATGGTTGCTGGGTGTGGAGCAGCAGAACCATATACCACACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATAAGTGGCCAAATTCAAGTGACACAAAGGAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGGCTTCCAGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCAGAGAAAATTATGCTAGCAAGGCAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCACGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGAATCCGAGATGAACTGCAACCTGTCATCTGAGAACACAGTGAAAGGTAAAAGAGATCATGTTCAAGAGTGTGATAATAATAAATGGGAAGAGTCACAGGACAATTTAGTAACTGTTGACAGTGTCCAAGTCCAACCTCATGATGGGTTGAAGCCGGAATTACATGCAGAAATGGATAGAGGGGTCCATGCCGAAAACGTGGTAATGGATCCTGGAACTGGGAAATTGCAAAACCAAAGGCTTGGCATGAGCAACAACAACAACCTTTATTCTATTTCAACCAACCAGAACGGTGGGGATGGGAGCCTAATGGGTTCTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACCGTGGGAGGCCACGTCTCGCTTGCGTTGGAGTTGAGGAACTGTGAAAGTGATGGGTTTGCCATGTCTGATGATGCCATCCACAAACGACGTAATCAAACATTGGCTTCTTCCCCTGAGGCTGATTTGTTAGATTATCATTTCACGGATTCAGGAAAGCAACAACACAGAGGTGTACCTCCACTAAGCTTAAAGAGAAAGCCTAtgctggctgccgctgctgctgctACCCTTTTTTCTTCCTCATTCTTGTTGCCCATTGTTCGTAAAAGTGATGCAAATCACGAACCGTACAAAAATATACAGACGAGGGAGGAAGGGGTTTGA 2022 0.4377 MYPNQAFSSGSYAEMMSGTSLLPHDYSESVGGQNEVKFITAMGGTVTMQSINGHSNAATGDPACNSYAGDSHVVSRTQMGIVDSEQNMQCHGLSLSLGTIMPSTSSVPPFQYQYHDTGLLPLMTDFPNLKGTMSLKDDEANNLHKELRSAECMASVSSGGFHDMIKKEGFYNPHTSMCLKEVPSDPCLQGSQGYSNSILNSQYLKEAQELLDEIVSVRKALKQPGMEKQENCRDIGLDGSKDSDGKSTGANGSTANASIELSPGERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGESEMNCNLSSENTVKGKRDHVQECDNNKWEESQDNLVTVDSVQVQPHDGLKPELHAEMDRGVHAENVVMDPGTGKLQNQRLGMSNNNNLYSISTNQNGGDGSLMGSTHATYDLSELGNFTVGGHVSLALELRNCESDGFAMSDDAIHKRRNQTLASSPEADLLDYHFTDSGKQQHRGVPPLSLKRKPMLAAAAAATLFSSSFLLPIVRKSDANHEPYKNIQTREEGV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00332 673 MobiDBLite consensus disorder prediction 225 241 - -
Cca07g00332 673 MobiDBLite consensus disorder prediction 225 263 - -
Cca07g00332 673 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Cca07g00332 673 SUPERFAMILY Homeodomain-like 376 442 IPR009057 -
Cca07g00332 673 Pfam Associated with HOX 198 333 IPR006563 -
Cca07g00332 673 CDD homeodomain 375 436 IPR001356 GO:0003677
Cca07g00332 673 MobiDBLite consensus disorder prediction 244 263 - -
Cca07g00332 673 SMART HOX_1 375 439 IPR001356 GO:0003677
Cca07g00332 673 Gene3D - 372 449 - -
Cca07g00332 673 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 600 - -
Cca07g00332 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 600 - -
Cca07g00332 673 SMART prehox3 192 334 IPR006563 -
Cca07g00332 673 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00332 Cca-Chr7 4433061 4436627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00332 193 459 Homeobox Transcription Factor Family AT2G16400 64.748 1.93e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca07g00332 POX 2.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00332 - - gmx:100791641 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00332 07 4433061 4436627 Cca07g00332 07 4433061 4436627 ECH