Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00322 ATGATGAAATCAGGCGTGGGAATTGAGGAGAGGAAGCAGGTGAAGAAACGAGCGCCGAGCAGGTCGAGAAAGGGGTGCATGAGAGGCAAAGGTGGACCTGAGAACGCGAGTTGCACCTACAAAGGTGTGAGGCAGAGAACATGGGGCAAATGGGTCGTTGAAATACGCGAACCCAACCGTGGTGCCCGCATCTGGCTCGGCACATTTGAGACCTCTCACCAGGCTGCTTTGGCTTATGATGCTGCAGCACGCAGGCTTTATGGCTCAGATGCCAAGCTCAATTTACCACACctctctatcaaacctcaatctcactctcactctTCtcaaaacaacatcaacatcaacatggctgcatgttccaatttcaacaccaacaccaacaccaTGGTGCCTCTTCCTTTGGACACCAATCCAAAACCTTTGGAGAACGAGGCAGAGTTTCGTCTATGGACACCACCAGTTTTTGATGATTCCATCTGGACAGAAGCTGCTATGTCCCTTGATTTTCCTCTACTTGCACCAGACACATCGGAGAACAACAGTTATATCATCAATTAA 561 0.4189 MMKSGVGIEERKQVKKRAPSRSRKGCMRGKGGPENASCTYKGVRQRTWGKWVVEIREPNRGARIWLGTFETSHQAALAYDAAARRLYGSDAKLNLPHLSIKPQSHSHSSQNNININMAACSNFNTNTNTMVPLPLDTNPKPLENEAEFRLWTPPVFDDSIWTEAAMSLDFPLLAPDTSENNSYIIN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00322 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 126 - -
Cca07g00322 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 106 182 - -
Cca07g00322 186 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Cca07g00322 186 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Cca07g00322 186 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Cca07g00322 186 MobiDBLite consensus disorder prediction 1 16 - -
Cca07g00322 186 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Cca07g00322 186 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Cca07g00322 186 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Cca07g00322 186 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Cca07g00322 186 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Cca07g00322 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 106 182 - -
Cca07g00322 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 126 - -
Cca07g00322 186 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00322 Cca-Chr7 4304132 4305122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00322 22 173 AP2-EREBP Transcription Factor Family AT1G75490 55.063 1.37e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g00322 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00322 - - ccaj:109802842 378.637