LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g00313	ATGGTGAATGAAGGTTGTTCTATTCCCACGATGGATCTTCTACGGTCGGAGCCCATGCAACTGGTTCAATTGATCATTCCAATCGAAGCAGCTCATCGATCCATTTCTTACCTCGGCGATCTCGGTCTCTTCCAATTCAAAGATCTCAATGCAGATAAAAGCCCATTCCAGCGGACTTATGCTGCTCAGATCAAAAGATGCGGGGAAATGGCACGTAGGCTACGGCTGTTTAAGGAACAAATGATGAAAGCAGGGGTATCACCCTCGCCGCGGTTAACAAGAGACCGTGACGATGATCTGGAAAGTTTGGAGGTTGTTAAACTTCAAGAACTTGAAGCTGAGCTACTTGAGATTAACGCAAATAATGAGAAGTTGCAACACACTTACAATGAGCTGTTAGAGTATAAGCTTGTTGTAGAGAAGGTTGGTGAGTTTTTCTCTTCAGCAAGAAGTAATGCTGTAGCTCACCAGAGGGACCTTGAAGTCTATGCAGGTGCTGAAGGGTCTCTTGACAGCCCATTATTATTGGAACAAGAGGAGACAACAACAAAGCAAGTTAAGCTGGGGTTTATATGTGGACTTGTTCCTAGGGAAAAATCAATTCCTTTTGAAAGAATTATATTTCGTGCTACTAGGGGAAATGTGTTTCTCAAACAGACTGTGGTTGAACATCCTGTTCTTGATCCTTTGTCAGGAGAGAAGGTTCATAAAAATGTATTTGTTGTCTTTTATTCTGGAGAGAGAGTTAAAAGTAAAATTCTGAAAATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCAGATGACTTGAGTAAACAATTTCAGACGATAACAGAGCTATACGTTTCAGGAAGACTTTCAGAATTGAAGACTACCATTGATGCAGGACAGATTCACCGGAGCACTCTATTGCAGACAATTGGATATAACTATGAGCGGTGGAGCCTTCAGTTGAAGAAGGAAAAATCCATTTATCACACTCTAAATATGCTTAGCATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGTTGGTGTCCTGTTTTTGCGACAAGTCAGATTCACAAAGTATTGCAGCGTGCAACAATGGACTGCAACTCTCAAGTTGGGGCGATATTTCAGGTTTTACAGACAAAGGAATCACCGCCTACCTATTTTTGCACAAACAAATTCACTTCTTCTTTTCAAGAAATTGTAGATGCCTATGGAGTCGCAAAGTACCAGGAAGCAAATCCCGGTGTATACACAATTGTCACCTTTCCATTCCTTTTTGCTGTAATGTTTGGTGACTGGGGTCATGGCATATGCTTATTACTGGCGGCTTTGTACTTCATAATCAGAGAGAAACAATTTTCGAGTCAGAAACTTGGAGACATAATGGAAATGGCTTTCGGCGGACGCTATGTTATTACCATGATGGCACTCTTCTCAATCTATACCGGGTTGATATATAACGAGTTCTTCTCTGTTCCATTTGAACTATTTGGCCCATCTGCCTATGGATGTCGTGATCCTTCATGCAGGGATGCTTCTACAACAGGCTTATTAAAAGTCCGTGGAACTTATCCATTTGGTGTGGATCCTAAATGGCATGGTACTCGGAGTGAATTGCCATTTCTTAATTCTTTGAAGATGAAAATGTCAATTCTGCTGGGAGTATCCCAGATGAACCTTGGAATCGTAATGAGTTATTTTAATGCAAAATACTTCGAAAACAACATAAATATCTGGTACCAGTTCGTTCCCCAGATGATATTCTTAAACAGCTTGTTTGGCTACCTTTCACTCCTCATAATTATAAAATGGTACAAAGGGTCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGCCCGACTGATGATTTGGGTGAAAACCAGCTTTTTGTTGGTCAGCAGTTCCTTCAACTCGTGTTACTACTTTTGGCACTAGTTGCTGTACCATGGATGCTATTACCAAAGCCCTTTCTCCTAAAGAAGCAACACCAAGAAAGGCATCAAGGTCAATCTTACTCTTTGCTTACGGATGACTCTCTCGAATCAGAGTCGCATAGTATTCCCCGTGACCATGACGAGTTTGAGTTCAGCGAGGTTTTTGTGCACCAACTCATACATACAATAGAATTTGTGCTTGGAGCTGTTTCTAATACAGCTTCATATCTACGTTTATGGGCCCTCAGCCTTGCTCATTCAGAGTTGTCCAGTGTTTTCTATGACAAAGTTCTGCTTCTGGCCTGGGGGTTCGATAACACTATTATTCTCATTGTTGGCATTTTAGTTTTTATATGTGCAACTGTTGGTGTGCTACTGTTAATGGAAACTCTAAGTGCTTTCTTGCATGCTTTGAGACTTCACTGGGTAGAGTTCCAGAACAAATTTTATGAGGGAGATGGTTACAAGTTTTTCCCGTTTTCATTTACATTACTCACGGATGAGGATGACCTGTAA	2457	0.4098	MVNEGCSIPTMDLLRSEPMQLVQLIIPIEAAHRSISYLGDLGLFQFKDLNADKSPFQRTYAAQIKRCGEMARRLRLFKEQMMKAGVSPSPRLTRDRDDDLESLEVVKLQELEAELLEINANNEKLQHTYNELLEYKLVVEKVGEFFSSARSNAVAHQRDLEVYAGAEGSLDSPLLLEQEETTTKQVKLGFICGLVPREKSIPFERIIFRATRGNVFLKQTVVEHPVLDPLSGEKVHKNVFVVFYSGERVKSKILKICDAFGANRYPFSDDLSKQFQTITELYVSGRLSELKTTIDAGQIHRSTLLQTIGYNYERWSLQLKKEKSIYHTLNMLSINVTKKCLLAEGWCPVFATSQIHKVLQRATMDCNSQVGAIFQVLQTKESPPTYFCTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLAALYFIIREKQFSSQKLGDIMEMAFGGRYVITMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDPSCRDASTTGLLKVRGTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIVMSYFNAKYFENNINIWYQFVPQMIFLNSLFGYLSLLIIIKWYKGSQADLYHVMIYMFLSPTDDLGENQLFVGQQFLQLVLLLLALVAVPWMLLPKPFLLKKQHQERHQGQSYSLLTDDSLESESHSIPRDHDEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFDNTIILIVGILVFICATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFFPFSFTLLTDEDDL	818

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g00313	818	PANTHER	VACUOLAR PROTON ATPASES	11	818	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Cca07g00313	818	PANTHER	V-TYPE PROTON ATPASE SUBUNIT A	11	818	-	-
	Cca07g00313	818	Pfam	V-type ATPase 116kDa subunit family	37	809	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Cca07g00313	818	PIRSF	ATP6V0A1	9	818	IPR026028	GO:0000220\|GO:0046961
	Cca07g00313	818	Coils	Coil	108	128	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g00313	Cca-Chr7	4158714	4167697	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g00313	11	817	Primary Pumps ATPases(2)	AT4G39080	74.969	0.0	1246

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g00313	K02154		-	gmx:100805813	1407.89

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