Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00311 ATGGCTGGGTTGTTCTCTCTAGGCCCACAAAACAAGGTAGAGGGAGAGGGAGAGGGAGAAAAAGGAGATAGTAACACTAACAGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAGCAACAAGGGGTTCGAGATATGGCCACAGGCACAAGCGTATCATCACCCCAACATGAGCAACTACTTTGCGTTTAGAGTGGGTCCTAGTCGCAGGAGCGTGAACGAGGAGGACGTGTCGTTCTGCGTGTCGGATGAGTCAACTAGATTTGGATTAACTGTGATGAGGTCTGGAGGCTCAGGAAGCGGTGGCGTCAACTGTCAGGACTGTGGCAACCAAGCCAAGAAAGACTGTGCGCATCTCAGATGCAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAACGCCGCGAACGACAACAACTACTCGCTGCATCGCACCACCCACAACTATGCGGGGGAGACAATATTCCTAAACGACACAGAGACTCTCAACTTGCCTGCTCTTCTCAACCCATCACTACCGCAGGGTTAGAGCTGGGGCAATTCCCACCTGAAGTGAACACTTCGGCGGTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCAGATGAACAGTGTGCGTATCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGACCAAGGCCCCGAAAGTTCTTACACTAGTGCACCGGCTGAGGGTTCCTCCGGTGGTGAACCTCAACAACTTGGTTTAATAACCGCCGCAACCACAGCCACAACCGGTGGGAACCCGTTTGAACCTTCACTTTACCCGGCTCCGCTGAATGCTTTCATTGCTGGTGGTACGCAATTCTACCAACCCCCGAGATCCTAA 912 0.5241 MAGLFSLGPQNKVEGEGEGEKGDSNTNRNNLLLFRNEEIYSNKGFEIWPQAQAYHHPNMSNYFAFRVGPSRRSVNEEDVSFCVSDESTRFGLTVMRSGGSGSGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQLLAASHHPQLCGGDNIPKRHRDSQLACSSQPITTAGLELGQFPPEVNTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAPAEGSSGGEPQQLGLITAATTATTGGNPFEPSLYPAPLNAFIAGGTQFYQPPRS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00311 303 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 301 IPR007818 GO:0003700|GO:0006355
Cca07g00311 303 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 194 242 IPR006511 -
Cca07g00311 303 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 106 148 IPR006510 -
Cca07g00311 303 Pfam Domain of unknown function (DUF702) 104 243 - -
Cca07g00311 303 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 301 - -
Cca07g00311 303 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00311 Cca-Chr7 4131931 4134331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00311 1 302 C2H2 Transcription Factor Family AT1G19790 42.936 4.01e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca07g00311 DUF702 7.8e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00311 - - gmx:100818588 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00329 05 7007788 7009757 Cca07g00311 07 4131931 4134331 PCT