Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00309 ATGGCTCGTGGGAAGATCCAGATCAAGAGGATAGAGAACACCACCAACAGGCAGGTGACTTACTCGAAACGACGGAATGGGCTTTTCAAGAAGGCCAACGAGCTCACGGTTCTGTGCGACGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAGCTCCACGAGTACATTAGCCCCTCCACCTCAACCAAGCACTTCTTCGATCAATACCAGATGACTCTAGGCGTAGATCTCTGGAACTCTCATTACGAGAATATGCAAGACAACCTCAAGAAACTCAAAGACCTGAATAGGAATCTTCGCAGGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGAGCATGGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATCGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTCCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCACTGATGGATAATGGAGGGGAGTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCCCTGACCCTACAGCCAAGCCATCCTAGTGCCCATAGCGGAGCAGCTTCTGATCTCACCACTTACCCCTTACTTTTCTAG 681 0.4758 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQDNLKKLKDLNRNLRREIRQRMGDCLNDLSMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALMDNGGEYESVIGFSNLGPRMFALTLQPSHPSAHSGAASDLTTYPLLF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00309 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca07g00309 226 Coils Coil 151 171 - -
Cca07g00309 226 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca07g00309 226 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Cca07g00309 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cca07g00309 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca07g00309 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca07g00309 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca07g00309 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca07g00309 226 PANTHER APETALA3 1 223 - -
Cca07g00309 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Cca07g00309 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca07g00309 226 Coils Coil 77 111 - -
Cca07g00309 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca07g00309 226 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cca07g00309 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00309 Cca-Chr7 4088571 4096859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00309 1 225 MADS-box Gene Family AT3G54340 55.411 2.59e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca07g00309 K-box 5.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00309 K09264 - gmx:547720 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00309 07 4088571 4096859 Cca07g00309 07 4088571 4096859 ECH