Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00302 ATGGCAACAACGGTTATATTCTTCACCTTCACCTTCACTCTCCTAGCATTCTTCGCCACTGCCCAAAACGACACCGTCCTAGAGATTCAAGCCTTAACCTCCTTCAAGCGGAACCTCCAGGACCCTCTCGGCTCCATGGACGGTTGGGATCCCTCCACGCCCTCAGCACCCTGCGACTGGCGCGGCATTCTCTGCCACAACAACCGAGTCCACCAGCTCCGCTTGCCGCGTCTCCAACTCGCGGGTCAACTCGCTCCCTCCCTCTCCAACCTCCTCCACCTCCGCAAACTCAGCCTCCACTCCAACAACCTCAACGCCTCCATCCCCTCCTCCCTCGCGCAATGCCTCTTCCTCCGCGCCCTCTACCTCCACAACAACAACCTCTCCGGCCACCTTCCGCCGCCGCTCCTCAATCTCACCAATCTCCAAATCCTCAGCGTCGCCCGCAACCTCCTCTCCGGGAAACTCCCCGGCCACCTCTCCGCCTCCCTCCGCTTCCTCGACCTCTCCTACAACGCCTTCACCGGAGGAATACCACCCTCCCTCGGAACACTACAGAACCTTCAGTATCTATGGCTGGATTCAAACCGCATTCACGGAACCCTACCCTCGGCGCTCGCCAACTGTTCCTCTCTGCTGCACCTCACCGCAGAGGATAACGCCCTCACCGGAGTTCTCCCTCCGACCCTCGGAACTATGCCGAACCTTCAAGTGCTGTCGCTTTCGCTCAATCAGTTCTCAGGTTCGGTCCCGGTGTCCGTGTTTTGCAACAGGAACTTAAGAAGCGTGAAGCTCGGCTTTAATTTCTTCACGGGGCTTTCCGCGCCGCAAAGTGCCGAATGCGACAGCGTTTTGGAGGTTTTGGATGTTAAAGAAAATGGCATTGCTCACGCGCCGTTTCCCTCGTGGTTGACCCACGCGACAACGCTCAAGGCTCTCGATCTTTCTGGAAACTTCTTTACCGGTTCTCTGCCGCTCGACATTGGGAACCTTTCCGCGTTGGAGGAACTGAGAGTGGCCAATAATTTGTTATCTGGCGTTGTTCCGCGTAGCATTGTAAATTGTCGGTTGTTGGAGGTTATTGATCTTCAGGGGAACCGGTTCTCTGGGTTAATTCCTGACTTTCTCGGGGAACTGAGGAACCTCAAAGACTTGTCTCTTGCCGGTAACCTTTTTACCGGCTCGGTGCCTTCTAGTTATGGAACGCTTACTGCGCTGGAGACGCTGAATTTGAGTGATAATAAGTTAAGCGGGGTTGTGCCTGAAGAGATCATGCAATTGGGGAACATGAGTGCTTTGAATCTCGGCAATAACAAGTTTTCGGGTCAAGTTTGGCCCAACATTGGGGACTTGACCGCTTTACAAGTTCTTAATTTGAGTGGGTGTGGGTTTTCAGGCAGGGTTCCTGCTACGTTGGGGAGGTTGATGAGACTCACGGTGTTGGATTTGAGCAAGCAGAACCTGTCGGGTGAGTTGCCGGTTGAGGTTTTTGGGCTACCGGGCCTGCAAGTTGTGGCGCTTCAAGAGAACCGTTTGAGTGGTGATGTTCCTGAGGGTTTCAGCAGCGTAGTGAGTCTGCGGTATCTTAATCTTAGCTCAAATGAATTTGTTGGTCACATTCCAATAACTTATGGGTTCCTTAGTTCTTTATCGGTTCTCTCTTTGTCTCACAATGGTGTTTCTGGTGGAATACCTCCCGAGATTGGTGGTTGTTCTCAACTTGAAGTTTTGCAGCTAAGGTCAAATTTTCTAGAGGGTAACATTCCGGATCAAATCTCTCGGCTCTCTCGTTTAAAAGAGCTTAATTTGGGTCGCAATAAGTTGAACGGTGATATCCCAGATGAAATATCTGAGTGTTCTGCTCTGAGTTCACTCTTGTTGGATGCTAATCACTTCACGGGTCATATACCAGGTTCCTTGTCCAAGTTATCAAAATTGACCGTGTTGAACCTTTCTTCAAATCTATTGAACGGCGAAATTCCGGTTGAACTATCAAGCATTTCTGGTTTGGAGTACTTCAATGTTTCTAGTAATAATCTTGAGGGTGAGATTCCTTTAACGCTTGGCACTACATTCAACGACCCTTCTGTGTTTGCCATGAACCAAGGCTTATGCGGGAAACCCTTGCACAGAGAATGTGCAAACGTGAGGAGAAAAAAGAGGAGAAGGCTAATAATTTTCATAGGCGTGGCAGTGGCTGGTTTGTGTCTCTTGGCCTTGTGTTGTGGTGGCTACATTTACAGCCTCTTGAGGTGGCGCAGGAAGCTTCGAGAAGGGGTCACGGGTGAGAAGAAACGGAGCCCCACAACGAGTGTGGGAGGAGAGAGAGGTAGTAGAGGGAGTGGAGAAAACGGAGGAGGGCCAAAACTAGTGATGTTCAACAAGAAGATCACGTACGCAGAGACATTGGAAGCAACGAGAAACTTCGACGAAGAGAACGTGTTGAGCAGGGGAAGATACGGCCTCGTGTTCAAAGCCTCTTACCAAGATGGCATGGTTCTCTCCATTCGCCGTTTTCTCGATGGGTTCATAGACGAGGGTACCTTCCGCAAGGAAGCGGAATCACTAGGCAAAGTGAAGCACAGAAACTTAACAGTTCTTCGCGGCTACTACGCAGGCCCACCCGATGTGAGACTTCTTGTGTACGACTACATGCCCAATGGAAACCTAGGGACTCTTCTCCAAGAGGCTTCTCAACAAGATGGGCATGTGCTGAATTGGCCAATGCGTCATCTCATTGCACTAGGCATTGCGCGAGGGCTAGCATTCCTGCACTCGGTGCCAATAGTGCATGGTGATGTGAAGCCTCAAAATGTTCTTTTTGACGCAGATTTTGAGGCCCATTTGTCTGAATTTGGGTTGGAGCGGTTGACAATGGCAGCAGCATTGGAAGCATCGTCGTCGTCGACCCCAGTTGGGTCCTTAGGGTATGTGTCGCCGGAAGCTGTGTCGAGTGGGGTGGCAGCGAAGGAGGGTGATGTGTATAGCTTTGGGATAGTGTTGTTGGAGATTCTGACGGGGAAGAAACCGGTGATGTTCACGGAAGATGAGGACATAGTGAAGTGGGTGAAGAGGCAATTGCAAAGGGGCCAAATATCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTAGACCCGGAGTCTTCGGAGTGGGAAGAGTTTTTGTTGGGTGTCAAAGTTGGTCTCCTATGCACAGCAACGGATCCTCTTGATCGACCATCAATGTCTGACGTTGTTTTCATGCTCCAAGGTTGCCGGGTTGGACCGGAGATTCCATCGTCAGCAGATCCCACTACACTACCTTCCCCTGCTTGA 3312 0.5118 MATTVIFFTFTFTLLAFFATAQNDTVLEIQALTSFKRNLQDPLGSMDGWDPSTPSAPCDWRGILCHNNRVHQLRLPRLQLAGQLAPSLSNLLHLRKLSLHSNNLNASIPSSLAQCLFLRALYLHNNNLSGHLPPPLLNLTNLQILSVARNLLSGKLPGHLSASLRFLDLSYNAFTGGIPPSLGTLQNLQYLWLDSNRIHGTLPSALANCSSLLHLTAEDNALTGVLPPTLGTMPNLQVLSLSLNQFSGSVPVSVFCNRNLRSVKLGFNFFTGLSAPQSAECDSVLEVLDVKENGIAHAPFPSWLTHATTLKALDLSGNFFTGSLPLDIGNLSALEELRVANNLLSGVVPRSIVNCRLLEVIDLQGNRFSGLIPDFLGELRNLKDLSLAGNLFTGSVPSSYGTLTALETLNLSDNKLSGVVPEEIMQLGNMSALNLGNNKFSGQVWPNIGDLTALQVLNLSGCGFSGRVPATLGRLMRLTVLDLSKQNLSGELPVEVFGLPGLQVVALQENRLSGDVPEGFSSVVSLRYLNLSSNEFVGHIPITYGFLSSLSVLSLSHNGVSGGIPPEIGGCSQLEVLQLRSNFLEGNIPDQISRLSRLKELNLGRNKLNGDIPDEISECSALSSLLLDANHFTGHIPGSLSKLSKLTVLNLSSNLLNGEIPVELSSISGLEYFNVSSNNLEGEIPLTLGTTFNDPSVFAMNQGLCGKPLHRECANVRRKKRRRLIIFIGVAVAGLCLLALCCGGYIYSLLRWRRKLREGVTGEKKRSPTTSVGGERGSRGSGENGGGPKLVMFNKKITYAETLEATRNFDEENVLSRGRYGLVFKASYQDGMVLSIRRFLDGFIDEGTFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTMAAALEASSSSTPVGSLGYVSPEAVSSGVAAKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVVFMLQGCRVGPEIPSSADPTTLPSPA 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00302 1103 Pfam Leucine rich repeat 477 535 IPR001611 GO:0005515
Cca07g00302 1103 Pfam Leucine rich repeat 380 440 IPR001611 GO:0005515
Cca07g00302 1103 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515
Cca07g00302 1103 Pfam Leucine rich repeat 573 632 IPR001611 GO:0005515
Cca07g00302 1103 Pfam Protein kinase domain 811 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00302 1103 Gene3D Ribonuclease Inhibitor 279 356 IPR032675 -
Cca07g00302 1103 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1099 - -
Cca07g00302 1103 Gene3D Ribonuclease Inhibitor 26 177 IPR032675 -
Cca07g00302 1103 Gene3D Ribonuclease Inhibitor 357 426 IPR032675 -
Cca07g00302 1103 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Cca07g00302 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Cca07g00302 1103 SUPERFAMILY L domain-like 473 690 - -
Cca07g00302 1103 Gene3D Ribonuclease Inhibitor 427 716 IPR032675 -
Cca07g00302 1103 SMART serkin_6 809 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00302 1103 SUPERFAMILY L domain-like 285 542 - -
Cca07g00302 1103 ProSiteProfiles Protein kinase domain profile. 809 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00302 1103 Gene3D Transferase(Phosphotransferase) domain 1 885 1089 - -
Cca07g00302 1103 Gene3D Phosphorylase Kinase; domain 1 788 884 - -
Cca07g00302 1103 SUPERFAMILY L domain-like 29 369 - -
Cca07g00302 1103 Pfam Leucine Rich Repeat 163 183 IPR001611 GO:0005515
Cca07g00302 1103 SMART LRR_typ_2 643 667 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 499 522 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 233 257 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 547 571 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 379 402 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 595 619 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 91 115 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 451 475 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 331 354 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 403 427 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 185 209 IPR003591 -
Cca07g00302 1103 SMART LRR_typ_2 139 163 IPR003591 -
Cca07g00302 1103 PANTHER LRR RECEPTOR-LIKE KINASE 3 1099 - -
Cca07g00302 1103 Gene3D Ribonuclease Inhibitor 178 278 IPR032675 -
Cca07g00302 1103 SUPERFAMILY Protein kinase-like (PK-like) 788 1092 IPR011009 -
Cca07g00302 1103 MobiDBLite consensus disorder prediction 760 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00302 Cca-Chr7 4002146 4006035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00302 1 1103 Receptor kinase-like Gene Family AT1G75640 61.896 0.0 1293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Cca07g00302 Pkinase 6.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00302 - - gmx:100784917 1821.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00302 07 4002146 4006035 Cca07g00302 07 4002146 4006035 ECH