Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00300 ATGGGCTGTGAAAATGGACATAGAATTGATGCAGCAGCTCGCCGACAACGACCCCAACCGCTATGGCACGCCGCCTGCCGCCAAGGACGTCGTCAAGAACCTCCCCACCGTCACCGTCGAAGAAGACATGCTGAACTCGGAGCTGAACCAGTGTGCGGTTTGCCAGGAGAGTTCGAGAAGGGGTCGCATGTGATGCAAATGCCCTGCAAGCACGTGTACCACGGTGATTGCTTGATTCCCTGGCTTCGCCTGCACAACTCTTGTCGCGTGTGCCGGTACGAATTGCCCACAAATGACGCCGATTATGAGAATCGGACGCAGGGGAACGCCGGTGATGGGTCGAGGTCCAGTGGGAGAGATAGTGGTGGCAGCGACAATGGCGGTGCAGGTGCAAGGGGGAGTAACAGGCCTGTTCACAGGACTTTTAGAATATATCTGGGGAATCCTTTTGATGCAGGTGGGTCTACGCACGACAGCGGGGAAAGGAGATGGAGGAATTTTCCAGAAGATATAGATTGA 519 0.553 MGCENGHRIDAAARRQRPQPLWHAACRQGRRQEPPHRHRRRRHAELGAEPVCGLPGEFEKGSHVMQMPCKHVYHGDCLIPWLRLHNSCRVCRYELPTNDADYENRTQGNAGDGSRSSGRDSGGSDNGGAGARGSNRPVHRTFRIYLGNPFDAGGSTHDSGERRWRNFPEDID 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00300 172 SUPERFAMILY RING/U-box 57 98 - -
Cca07g00300 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 110 IPR013083 -
Cca07g00300 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 152 - -
Cca07g00300 172 MobiDBLite consensus disorder prediction 156 172 - -
Cca07g00300 172 MobiDBLite consensus disorder prediction 100 123 - -
Cca07g00300 172 MobiDBLite consensus disorder prediction 100 172 - -
Cca07g00300 172 Pfam Ring finger domain 51 92 IPR001841 -
Cca07g00300 172 PANTHER OS06G0101300 PROTEIN 57 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00300 Cca-Chr7 3963617 3964323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00300 51 103 C3H Transcription Factor Family AT5G01980 51.852 7.14e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00300 K11982 - gmx:100785289 142.124