Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00298 ATGAGCAGAAGACCACCACCTGATCCCGTGGCTGTGCTACGGGGTCATCGAGCTTCAGTCACAGACGTTTCTTTTCATCACTGTAAGCCAATATTATTCTCCAGTTCTGCTGATGGTGAAGTGCGGATGTGGGATACCCTTCAGCATCGAACAGTGTCATCTGCATGGTTACACAGTGCCTCACATGGTATTGTTGCTGTTGCCAGTAGTTCTTCCCTCGGAACCAACAAATTTATTAGCCAGGGTAGGGATGGAACTGTGAAAGTTTGGGAATTTGATGATGCTGGTTTGTCCAGGATTCCATCACTTACAATCAAGACAAACACTTACCACTTTTGCAAGTTTTCCACGGTGAAGAGTCGTTCTGTCTGGTCTAAAGAATGCAAAGCATTAAAAGATTGCAACAGAACAGAGCTAGGAGGATTGTCTGATAGAAATATTCCGGAGGTTAACAAAGAGGCTTACACCAATCAAAGTTGTTCTGAAAGCTTTGGAGAAAATTTGTATAATGAAGGGCTACAATATGTGGCTTTGTCAGGGGAAAACTCTTCAGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAAATTTTTAAGACTCCCTTCAAGCAATCCTAGTAACTCTTTGAGTGCTTGTAACAAAGGGATGTGCATGGCACTTCAATTGTTTTTACCATCTGAATCACAAGGATTTTTTCATGTCCTGGCTGGATATGAGGATGGTTCCATGCTTTGGTGGGATGTACGAAATCCTGGAGTTCCAGTAACTTCTGTAAAATTCCATTCTGAGCCAGTTCTTAGCATCTGTATTGACGGATCTTGCAAAGGGGGTATCTCAGGAGCTGCGGATGACAAAATTGTCATGTACAGCTTGGATCATTCCTCGGGTACGTGTGTGATCAAGAAAGAAATCAGTTTGGAGCGACCTGGCATCTCGGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGACCACAGGTTGAGGATATATGATTATCGCAAAGGAAATGCTTTAGCTATTTTAAAGTATCACCATGGCACGTGCAATGCTGTAACCTATTCGTCTGATTGTAAACTTATGGCCTCTGCATCGGAAGACACAACTGTGGGACTATGGGAATTGTATCCGCCTCGGATATGA 1155 0.4364 MSRRPPPDPVAVLRGHRASVTDVSFHHCKPILFSSSADGEVRMWDTLQHRTVSSAWLHSASHGIVAVASSSSLGTNKFISQGRDGTVKVWEFDDAGLSRIPSLTIKTNTYHFCKFSTVKSRSVWSKECKALKDCNRTELGGLSDRNIPEVNKEAYTNQSCSESFGENLYNEGLQYVALSGENSSEVEIWDLKSAEKFLRLPSSNPSNSLSACNKGMCMALQLFLPSESQGFFHVLAGYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSICIDGSCKGGISGAADDKIVMYSLDHSSGTCVIKKEISLERPGISGTSIRPDGKIAATAGWDHRLRIYDYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00298 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Cca07g00298 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 384 IPR001680 GO:0005515
Cca07g00298 384 SMART WD40_4 339 378 IPR001680 GO:0005515
Cca07g00298 384 SMART WD40_4 251 290 IPR001680 GO:0005515
Cca07g00298 384 SMART WD40_4 50 91 IPR001680 GO:0005515
Cca07g00298 384 SMART WD40_4 6 45 IPR001680 GO:0005515
Cca07g00298 384 SMART WD40_4 297 336 IPR001680 GO:0005515
Cca07g00298 384 Gene3D - 168 382 IPR015943 GO:0005515
Cca07g00298 384 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Cca07g00298 384 Pfam WD domain, G-beta repeat 343 377 IPR001680 GO:0005515
Cca07g00298 384 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Cca07g00298 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 384 - -
Cca07g00298 384 PANTHER TRANSDUCIN BETA-LIKE 3 3 383 - -
Cca07g00298 384 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Cca07g00298 384 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Cca07g00298 384 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Cca07g00298 384 PANTHER - 3 383 - -
Cca07g00298 384 Gene3D - 4 141 IPR015943 GO:0005515
Cca07g00298 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Cca07g00298 384 SUPERFAMILY WD40 repeat-like 4 378 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00298 Cca-Chr7 3943401 3953077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00298 234 383 U-box Gene Family AT2G33340 26.623 4.51e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00298 K24770 - gmx:100800482 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00298 07 3943401 3953077 Cca07g00298 07 3943401 3953077 ECH