Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00294 ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCAGATCAATACAAATCTGCCCAGGGACAGTGGTTGATGCAACATCAGCCATCTATGAAGCAGATTATGGCAATTATGGCTGAAAGAGATGCAGCCATTCAAGAAAGAAATTTGGCCATTTCTGAGAAAAAGGCTGCATATGCTGAGCGTGATGTGGCACTTCTACAGCGAGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGATAATGCAATTGCAACTCTTCAGTATCGAGAAACCTCCTTATCTAGTGGCAGTATGCCATCATGCCCTCCAGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATTTACCTAACATGGGTGATGCTTCTTACAACACACGGGAAATGCACCCAACTGATGCCCTCCCTGCTGCCCCCATCCCTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGACCAAAGGAACCTAAGTCAACATCACCTAATAAGAAGACTTCAAAAGCAGCAAAGAAAGTCAAGAAGGAGAGCGAAGACTTGAATAAGGTTATGTTTGGCAAGGCACATGAGTGGAAGAGTGGTCAGGAAATGGTCAACGGAGGTGATGATCTTAACAAGCAGTTAGCTGTGTCAAAAGCTGATTGGAAAGGTCAGGATTTGGGGTTGAACCAAGTGTCTTATGACGAGTCAACTATGCCAGCGCCAGTGTGCTCTTGTACCAGTGTTCTGAGGCAGTGTTACAAATGGGGTAATGGGGGTTGGCAGTCTGCCTGTTGCACAACTACTCTGTCAATGTATCCACTTCCTGCAGTACCCAACAAGAGGCATGCCCGGGTAGGCGGTCGGAAGATGAGTGGGAGTGCTTTCAACAAACTGCTTAGTCGTCTTGCAGCAGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCATTGGGCCAAACATGGAACAAACCGATACATCACAATAAAGTAG 1014 0.4684 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDVALLQRDAAIAERNNAILERDNAIATLQYRETSLSSGSMPSCPPGCQISRGVKHIHHPQQQVHHLPNMGDASYNTREMHPTDALPAAPIPSEAGKSRRAKRPKEPKSTSPNKKTSKAAKKVKKESEDLNKVMFGKAHEWKSGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVSYDESTMPAPVCSCTSVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00294 337 Coils Coil 65 85 - -
Cca07g00294 337 MobiDBLite consensus disorder prediction 120 190 - -
Cca07g00294 337 SMART GAGA_bind_2 1 337 IPR010409 -
Cca07g00294 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Cca07g00294 337 MobiDBLite consensus disorder prediction 158 174 - -
Cca07g00294 337 MobiDBLite consensus disorder prediction 1 15 - -
Cca07g00294 337 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g00294 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 212 337 - -
Cca07g00294 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 206 - -
Cca07g00294 337 PANTHER - 212 337 IPR010409 -
Cca07g00294 337 PANTHER - 1 206 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00294 Cca-Chr7 3881498 3882660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00294 65 337 BBR or BPC Transcription factor family AT5G42520 64.483 1.05e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Cca07g00294 GAGA_bind 3.2e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00294 - - gmx:100783502 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00294 07 3881498 3882660 Cca07g00294 07 3881498 3882660 ECH