Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00287 ATGTCAGGGGCAGTCGGAAAATGCAGCAGAATCCGGCACATCGTGAGGCTCCGCCAAATGCTGCGGCGGTGGCGGAGCAAGGCCAGCGCCCGCAAGTCGGCCCCCCGGATACCGTCGGATGTTCCGGCGGGACACGTGGCGGTGTGCGTGGGCAGCAGCTCCACGAGATTTGTGGTGCGCGCCACGCACCTGAACCACCCCGTCTTCAAGAACTTACTCCTTCAGGCAGAGGAAGAGTACGGGTTCGGCAACCATGGTCCTCTCACAATCCCCTGCGACGAATCACACTTCCAACAACTCATCCGCTTCATTTCACGCTCCGAATCCAACCGCTTCGACGACTGCCACCTCACCCTCCGAAACAACCTCGACTTCTGTCTCGAGTCTCGACCACTACTCCACTGA 405 0.6025 MSGAVGKCSRIRHIVRLRQMLRRWRSKASARKSAPRIPSDVPAGHVAVCVGSSSTRFVVRATHLNHPVFKNLLLQAEEEYGFGNHGPLTIPCDESHFQQLIRFISRSESNRFDDCHLTLRNNLDFCLESRPLLH 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00287 134 Pfam Auxin responsive protein 16 103 IPR003676 GO:0009733
Cca07g00287 134 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 132 IPR003676 GO:0009733
Cca07g00287 134 PANTHER SMALL AUXIN-UP RNA-RELATED 7 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00287 Cca-Chr7 3767510 3768248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00287 5 133 Calmodulin-binding Proteins AT4G34750 49.296 1.59e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00287 K14488 - gmx:100794795 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00287 07 3767510 3768248 Cca07g00287 07 3767510 3768248 ECH
Cca05g00350 05 7673664 7674113 Cca07g00287 07 3767510 3768248 PCT