Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00285 ATGAGTTCTCATGTTGAAACTGTTTCAGAATGTTTTGTGAAGCCATCAGGCTCAACTAAAGAGTCAAGCCAAATATTCAATTTAGCACCTTGGGATATTGTTGTGCTTTCTATTCACTACATCCAGATTGGCATACTAATGAAGGAGCAATCTCCGCTTGATAATGATAAAGATTTTCTGGAATTTTTCTTGAACATGCTCAAGCACACTCTTNNNNNNNNNNTGAACATGCTCAAGCACACGCTTTCCCTTTCCCTCTTCCATTTTTATCCATTGGCTGGCCATCTTGTCATCCAAAAAATCAAAGACCCTTCCTCTTATACTTTTTCCATTGATTGTAACAATAGTCGTGGAGCTAGGTTCATCTATGCAACATTGGACATGAGTGTATCCGACATACTTTCCCCCGTTGACGTTCCACCCATTGTTAATTCATTCTTCGATCATAACAAAGTATTGAACCATGATGGTCACACTATGCCACTATTTTCTGTTAAAGTCACTAAGCTAGTGGATGGTTTTTTCATAGGTTGTTCCATGAACCATGCCGTAGCTGATGGGACTTCTCTTTTTAATTTTATTAGTACATGGTTTGAGATCATTCATGCTCAAGTTCAAGCCAAAGATGTAGCCATTTTACGCCATCCAATTCATAATCGATGGTTTCCAGATGGTTTTGGTCCTTTCATCAATCTTCCCTTGAAAGATGTAATTGAGTTCAATAAGAAATTTGAAGAACCCAATTTGAGAGTGAGAATCTTCCACTTTTCAGCAGATTCTATTGCAAAGCTGAAAGGAAGGGCCAACTGGGAGTCCAAAACCACTGAAATTAGTTCATTCCAATCGTTAGCAGCACATGTTTGGAGATCCATAACGCGTGCACGCCACCTATCACATGATCAAAAAGTAAGTTGCAATTTGTTCGCAGATAATCGAATGAGATTAGAACCACCTTTGCCATACGAGTACTTTGGAAATGCAGTTGATTCAATAAGTGCAACGAGCACAGCTGGGGAATTGCTTGAACATGGTCTAGGCTGGGCAGCATGGAAGTTGCACCTTGGTGTCGTAAACCATAACGACAAAACGGTGCAAGGTATGCTCCATGACTGGCTACAACGTCCAACGCTACACCAATTTGATTCTCTCTATGGTTCGTGCAATGTCACAATCACAAGTTCACCTAGGTTCAACCCCTATGATAAATATTTTTGGATGTGGAAAGGGGTGGCTATTTTGAGTGGGGGTAACAATAAGTTTGATGGAAAAGTGGCATCATATGCCGGTTATGATCGAGGAAGCATAGATTTAGAAGTGTGCCTTTCGTCCGATTCCATGAGTGCTCTAGAATCAGATCAGGATTTCCTGGGACTCGTTTCTATTGCCACTCCCCTGTGA 1398 0.4056 MSSHVETVSECFVKPSGSTKESSQIFNLAPWDIVVLSIHYIQIGILMKEQSPLDNDKDFLEFFLNMLKHTLXXXXNMLKHTLSLSLFHFYPLAGHLVIQKIKDPSSYTFSIDCNNSRGARFIYATLDMSVSDILSPVDVPPIVNSFFDHNKVLNHDGHTMPLFSVKVTKLVDGFFIGCSMNHAVADGTSLFNFISTWFEIIHAQVQAKDVAILRHPIHNRWFPDGFGPFINLPLKDVIEFNKKFEEPNLRVRIFHFSADSIAKLKGRANWESKTTEISSFQSLAAHVWRSITRARHLSHDQKVSCNLFADNRMRLEPPLPYEYFGNAVDSISATSTAGELLEHGLGWAAWKLHLGVVNHNDKTVQGMLHDWLQRPTLHQFDSLYGSCNVTITSSPRFNPYDKYFWMWKGVAILSGGNNKFDGKVASYAGYDRGSIDLEVCLSSDSMSALESDQDFLGLVSIATPL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00285 465 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 2 457 - -
Cca07g00285 465 Pfam Transferase family 4 455 - -
Cca07g00285 465 Gene3D - 237 451 IPR023213 -
Cca07g00285 465 Gene3D - 1 224 IPR023213 -
Cca07g00285 465 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 2 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00285 Cca-Chr7 3695653 3697076 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00285 76 450 Monolignol Biosynthesis Gene Families AT5G48930 28.070 2.09e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00285 - - gmx:100788297 564.303