Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00284 ATGATTCTAAACGCCCAAGGACCACCACGCCCGTCCCAACGCCACCTCCGCCTCCGCCGGCGACGGGGCCACAGAAAGAACACAGGCCTATGCGTCCTGTCCGGTTCGGGAACCGTCACCAACGTCACTCTCCGTCAACCCTCTGTCACCCCCGGAGCCACCGTCACTTTCCACGGCCGCTTTGATGTCCTCTCCCTCTCCGCCACGCTCCTCCTCCACGACTCGCCAGCAATCGCGGTCTCCGCCTTCGCCGTCTTGCAAaaaaaaataaaaatgtga 279 0.6022 MILNAQGPPRPSQRHLRLRRRRGHRKNTGLCVLSGSGTVTNVTLRQPSVTPGATVTFHGRFDVLSLSATLLLHDSPAIAVSAFAVLQKKIKM 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00284 92 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 84 IPR014476 GO:0003680
Cca07g00284 92 MobiDBLite consensus disorder prediction 1 30 - -
Cca07g00284 92 MobiDBLite consensus disorder prediction 13 27 - -
Cca07g00284 92 CDD DUF296 29 76 IPR005175 -
Cca07g00284 92 ProSiteProfiles PPC domain profile profile. 1 92 IPR005175 -
Cca07g00284 92 Pfam Plants and Prokaryotes Conserved (PCC) domain 25 79 IPR005175 -
Cca07g00284 92 Gene3D - 23 89 - -
Cca07g00284 92 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 24 84 - -
Cca07g00284 92 SUPERFAMILY AF0104/ALDC/Ptd012-like 27 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00284 Cca-Chr7 3682760 3683038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00284 25 71 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 68.750 6.08e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00284 - - ccaj:109810856 115.546