Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00281 ATGTCGCGGCAGGAGGCCAACCCAAGAAGAGGACCTCTTCAGTGCTCGCGCTCGCAGAAGGTTCCAGAGAGGTCTCACAGAAAGCCCATGGCCTTTATTAAGAAGCTTCGCAAAGCGAAAAGGGTAGCTCCACCAGGTGAGAAGCCAGAACCAGTCCGCACCCACCTCCGTAACATGATCATTGTGCCTGAGAGGATTGGTATCATTATTGGAGTATACAATGGCAAGACTTTTAACCAGGTTGAAATCAAACCCGAGATGATTGGGCATTATCTGGCTGAGTTCTCTATTTCATACAAGCCCGTTAAGCATGGAAGACCTGGTATTGGTGCTACTCACTCATCCAGAGAGGACTTGAGGATGTCATGA 369 0.4905 MSRQEANPRRGPLQCSRSQKVPERSHRKPMAFIKKLRKAKRVAPPGEKPEPVRTHLRNMIIVPERIGIIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSREDLRMS 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00281 122 MobiDBLite consensus disorder prediction 103 122 - -
Cca07g00281 122 TIGRFAM uS19_arch: ribosomal protein uS19 26 116 IPR005713 GO:0003735|GO:0006412|GO:0015935
Cca07g00281 122 MobiDBLite consensus disorder prediction 1 51 - -
Cca07g00281 122 Hamap 30S ribosomal protein S19 [rpsS]. 15 110 IPR002222 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 26 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 6 120 IPR002222 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 SUPERFAMILY Ribosomal protein S19 24 105 IPR023575 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 Pfam Ribosomal protein S19 24 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 Gene3D 30s Ribosomal Protein S19; Chain A 4 119 IPR023575 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 ProSitePatterns Ribosomal protein S19 signature. 74 98 IPR020934 GO:0003723
Cca07g00281 122 PRINTS Ribosomal protein S19 family signature 54 73 IPR002222 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 PRINTS Ribosomal protein S19 family signature 74 86 IPR002222 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 PRINTS Ribosomal protein S19 family signature 86 101 IPR002222 GO:0003735|GO:0005840|GO:0006412
Cca07g00281 122 PANTHER BNAA03G55820D PROTEIN 26 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00281 Cca-Chr7 3613481 3615073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00281 27 116 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 93.333 6.20e-57 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00281 K02958 - cpap:110814112 172.94