Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00274 ATGTCAACTTCGCGCGAGGATCAACCTTCTCAATTCAAATTCCAGCTATTGCATTCCCCTTCCCATTTCCCTCATCCTCATCCCCACTCTCTCTTTCCTAATTTCCCCTCTAGTCAAAGGTATGAACTCAATAATTTCAAGTCTCACATAAGTAATATCGAAGTAGCTCCTGGCATGATCACAACAGTTAATCTTCCTCCCGCTTCAGTTCGAACCGAGCCTAGCATAAGAGGAAAGCATAATGGGAAAACAAAAGCTTCAAAAAATGCAAAGTCTGGGACACAAAGACCAACTGCCGATTCCCCTAATTTGACTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTCAGCTTGATCCAGGATGCTAAGGATGGCACCCTGGATTTAAATAAAACCGCTGAGATCTTAGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTACTTGAAGGGGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAAGGATGTGATGGACATGGGCCACGAGAACTCGGAGACCAAGTTAACAGTCTAAAGGCTGAAGTTGAAAGTCTATATGCTGAGGAATGCGAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTGAGAGACCTGGAGGAAAAAGAAAGTTCTCAAAAGTACCTTTTTTTGACCAAGGAAGATATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCAGATGAGGAATTAGGTTTCCGGCAAAGGCAATACAAAATGATTGTTAGAAGTGCCACTGGACCAATATATTTGTATCTCTTGAGCAAGGACGATCGCAAGTTTGAGGATGATAGTGTCAAGCGGGTGAAATTAATGGATCCATCATGGAATAGAGATCACTACAGAAACATGGGTGTGGAATTATTAGAAAGCCAAGATGATGAAAAAAATCCTTCTGAGAATTTCAGTTTGCAGGGGTCACAAGCATTTGGAATTCAAGAAATTGCTCACACGGGTTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCTAACAGAATTGTGGGCCAATGAGCAGTTGGGTTATATAGATGAGCTTCAAGAAGATTAA 1176 0.4048 MSTSREDQPSQFKFQLLHSPSHFPHPHPHSLFPNFPSSQRYELNNFKSHISNIEVAPGMITTVNLPPASVRTEPSIRGKHNGKTKASKNAKSGTQRPTADSPNLTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGHGPRELGDQVNSLKAEVESLYAEECELDDCIRKKQELLRDLEEKESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASFIEVPDPDEELGFRQRQYKMIVRSATGPIYLYLLSKDDRKFEDDSVKRVKLMDPSWNRDHYRNMGVELLESQDDEKNPSENFSLQGSQAFGIQEIAHTGFEMEDDYWFQSDPGVSLTELWANEQLGYIDELQED 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00274 391 Coils Coil 206 226 - -
Cca07g00274 391 MobiDBLite consensus disorder prediction 87 105 - -
Cca07g00274 391 PANTHER TRANSCRIPTION FACTOR E2F 26 380 IPR015633 GO:0000978|GO:0006357
Cca07g00274 391 Pfam E2F/DP family winged-helix DNA-binding domain 113 176 IPR003316 GO:0005667|GO:0006355
Cca07g00274 391 SUPERFAMILY "Winged helix" DNA-binding domain 111 174 IPR036390 -
Cca07g00274 391 MobiDBLite consensus disorder prediction 65 105 - -
Cca07g00274 391 SMART E2F_TDP_2 111 176 IPR003316 GO:0005667|GO:0006355
Cca07g00274 391 Gene3D - 106 178 IPR036388 -
Cca07g00274 391 SUPERFAMILY E2F-DP heterodimerization region 187 294 IPR037241 -
Cca07g00274 391 CDD E2F_DD 187 294 IPR032198 GO:0046983
Cca07g00274 391 Pfam E2F transcription factor CC-MB domain 192 291 IPR032198 GO:0046983
Cca07g00274 391 Gene3D - 183 294 - -
Cca07g00274 391 PANTHER TRANSCRIPTION FACTOR E2FC 26 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00274 Cca-Chr7 3516998 3520983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00274 76 379 E2F-DP Transcription Factor Family AT1G47870 50.987 7.31e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Cca07g00274 E2F_CC-MB 2.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00274 K06620 - gmx:100797301 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00274 07 3516998 3520983 Cca07g00274 07 3516998 3520983 ECH