Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00260 ATGACTCTTGAAGATTTTTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAGAAGGAAAAAGATTGTGAGGTTAAAAATGCTGCTGATGCAACAAGGCAATGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGACTGCCTCGATCTTTTTATTCAATTAGATGGAGTTTGCTTTATTAATAGATGGTTGAAGGATGCCCAAAATTTTGGGGTTGATACAAACGACAGCTTTGTTGAGGAATCAATCACTGCAATGTTACGTGCAGTTGAAAAGCTGCATCTAGACAGTGAGAAGTCAATGTCATCAGGAATTCACATCACTGTAAGTAATCTTCTTGACCACCAAAGTGCTAGGGTTCAGGATAGAGCAAGGACATTATTTGACAGCTGGAAGGGAGGTGGAAATGGTGATGCTGAATCTCATGATGTGGAGCTTGCCAAGGTTGACAATACAAGTGACGATATTGTCAGGGAAGAAGCCCAGCCATCTGCTTCAAATGAAGCTGGCAATGATATTGATCATGCATCAGGACTAATTGGAAGTGAGAAATCTTTATTGAGAAGCTCAAATAATTTACCAATACATAGTTCTGATAATGTGTTGCAGTCATCCACCAGTGTGGAATGTGATGACATCAAAGAGGGATCAGCAAACCATGTTACTGGTGTTCCATCTTCTGCTCAAGAAGTTACTCCCGTACATGAAGGATTGCCGCTATGCACTACAGCTGAGACCACTTCAGTTGGACCCTCTATGTTTCCCATTTCAAATCAAGACAGTTTTGAAGAACAGTCAGACGCAATACAGTTAAGTGACTTAGCTAAAATGGAAAAGCAGGAGAAAAATGTTAATGACCCTTCAGAAAAATTGGGAGCGCCAGATATCTGTTCTATGTCCTCTTCTAAGCCTGAGCCCGAGCCCAAGCCCGAGCCTGTTTCCATGGTTCCAGAGCCAGCAGCACCAGAATCTGAGAATGAATCTGCTTTAGAGCAAAATGTTGAACACAGCGAGGATGGTGTTTGTCATAAAATAACTACTTCTGCTAGTATGAGTACACCTGCATCTGATAGGAGTGGGGAAGATGATGTTAGAAGTGTAACCGGCACTCCACAAGTTTTCAAAGCTGCAGAAAATGATAATGATTGTTGTTCTAATGCATTGCAGGACACATCAGTCAGTGACAGTAACTTGGGAAAGACTGAGGTGTTAGACATGTCTGTTTCTGGAACAGAAAATGTCACAGCATCAAATGAAGGCAAGGGCCATGTTTATAATGGTGACGAAGATAAATCAAATGGTTCTGATTCTAGTAATCCTGGAATAAATTTCAGAATCCCCAAGACAATTGACAATAGAGGTTCTGACAATGAACTTGACTGTGGTATTGTGGATGCTTTAGAATTTGCTCGACAAGTTGCTGAGGAAGTTAATAGGGAGGTCTGCAGTTCTTCGGAAAAAATCTCCGAAGGCGGATTCAGGCAACCAGGCAGTCCAGATTCTGTGAGTAAAGAGGATGAGCTCACTCCTGTCCCACCCAAGGAGGTCTCCACCAGACAAAACCATGCTACTGAGGCATGTTCAATGGAGGGGCGTGTGAGTGTTTTAGAAAACACCAAGGTTGAACCAGAATGCAGACCTGACATGGTGTCCTTGGAGTTGACTGAAGCAGCTCAAGATTCAGGAGGCAGTTCAGAGAAGCGTCTCTGCGGCTTTGATCTCAATGAAGTTGGTTCTGATGATATGGATGTTTCTGTAAAGACTATGTCTATGCCAATACCTGTTGTCTCTGCTTCAAGGCCTGCACCAACTCCTGGGTTGCCTGTGGCTCCTTTGCAGTTTCAGGGAACACTTGGATGGAAAGGAACAGCTGCCACCAGTGCCTTTCGACCTGCATCACCTCGTAAGAATTGTGATGGTGAGAGGAATCTTTCTGTTGATATGAACTTTGACACTTCCAAGCAGAGGAAGGATTGGCTTGATATTGATCTAAATGTGGCTGAGGGTGAAGAAGGCACATTTAAACCTATTGCTGAATCTTCAGGCAGGCCTTCTGGGCAATCATCCGTTGAACTTGATACTAAAAGATCAAGCAGGCTTGAATTTGATTTGAACAGTATTGGTGATGATGGTGATGCCCAGCCTTCGGATCACAGGATGGAGGGACAACTCTTTCTTGGAAGAAGTAGCTATTGGAGCCCCTCACCTGCATCGTCGTCATCGTCAATGCAGCCATCTGTTAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAATTGATTTGGTAGACCAGGGCCCCAGTAAGTCTTCTCATATTATCAATGCATATGGTTGTTCTAAATCATCAGATGCTCCTGTTATCTCTCTTTTGGGTGCCAAGGTAGAAGTTGGTAAAAAAGAATGTGTTCCTCAAACTCTGTCTTTGCCGAATGGCAAGGCTATTGAACCTGCAATTGATCTTACAATGTCAAGAGCAGGTAGTGTTTTAGGTATAGCCCCCACAGTACCCTTCAATCATTCATCTATTTTTGGGTATAATGGAGTGACATCAGCATCAGCGGCACCTGCAATGTCTTTTTCATCAGCCATGTTCGGGTCAGGTGGCTCAATTCCATATATGGTGGACTCGAGAGGAGCTCCAGTTGTTCCTCAAGTGGGTGGATCTTCATCAACTGTCCTTTCATCTTTCTCTCAGCCACCAATCTTTATGAACATGACCGGTACACAACTCGGTCTGAATGGATTTGGACCTTCGCGTCCTAACCTTGACTTGAACTCTGGCTTCATGATTGAGGATGCGAATAGAGACGCATTGGCTGCAAGACAAATTTTCTTTCCTGGTCAGAGCAGGACTGGGGAGGAGCATGTAAGAACCATGCCGCAACCGTCAAGTTCTGGTGTTAATGGGAAACGAAAGGAACCTGACAGTGGTTGGGAACCCTACCCATTTAGCTACAAACATCCGCAACCTCCATGGAAGTAG 3030 0.4413 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKDCEVKNAADATRQWAAVASTIAATENKDCLDLFIQLDGVCFINRWLKDAQNFGVDTNDSFVEESITAMLRAVEKLHLDSEKSMSSGIHITVSNLLDHQSARVQDRARTLFDSWKGGGNGDAESHDVELAKVDNTSDDIVREEAQPSASNEAGNDIDHASGLIGSEKSLLRSSNNLPIHSSDNVLQSSTSVECDDIKEGSANHVTGVPSSAQEVTPVHEGLPLCTTAETTSVGPSMFPISNQDSFEEQSDAIQLSDLAKMEKQEKNVNDPSEKLGAPDICSMSSSKPEPEPKPEPVSMVPEPAAPESENESALEQNVEHSEDGVCHKITTSASMSTPASDRSGEDDVRSVTGTPQVFKAAENDNDCCSNALQDTSVSDSNLGKTEVLDMSVSGTENVTASNEGKGHVYNGDEDKSNGSDSSNPGINFRIPKTIDNRGSDNELDCGIVDALEFARQVAEEVNREVCSSSEKISEGGFRQPGSPDSVSKEDELTPVPPKEVSTRQNHATEACSMEGRVSVLENTKVEPECRPDMVSLELTEAAQDSGGSSEKRLCGFDLNEVGSDDMDVSVKTMSMPIPVVSASRPAPTPGLPVAPLQFQGTLGWKGTAATSAFRPASPRKNCDGERNLSVDMNFDTSKQRKDWLDIDLNVAEGEEGTFKPIAESSGRPSGQSSVELDTKRSSRLEFDLNSIGDDGDAQPSDHRMEGQLFLGRSSYWSPSPASSSSSMQPSVRNIDLNDRPCLQIDLVDQGPSKSSHIINAYGCSKSSDAPVISLLGAKVEVGKKECVPQTLSLPNGKAIEPAIDLTMSRAGSVLGIAPTVPFNHSSIFGYNGVTSASAAPAMSFSSAMFGSGGSIPYMVDSRGAPVVPQVGGSSSTVLSSFSQPPIFMNMTGTQLGLNGFGPSRPNLDLNSGFMIEDANRDALAARQIFFPGQSRTGEEHVRTMPQPSSSGVNGKRKEPDSGWEPYPFSYKHPQPPWK 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00260 1009 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 358 372 - -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 421 471 - -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 493 538 - -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 970 986 - -
Cca07g00260 1009 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1009 - -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 446 460 - -
Cca07g00260 1009 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Cca07g00260 1009 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 1009 - -
Cca07g00260 1009 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 149 IPR035441 -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 686 710 - -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 421 435 - -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 962 1009 - -
Cca07g00260 1009 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Cca07g00260 1009 MobiDBLite consensus disorder prediction 293 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00260 Cca-Chr7 3310481 3316250 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca07g00260 Med26 4.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00260 - - ccaj:109815659 1936
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00260 07 3310481 3316250 Cca07g00260 07 3310481 3316250 ECH