Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00242 ATGACTCAAGATCTTGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTGCACCTGCTCCATCTACTTTGCAGAATTTGAAGGAGATAGGGTCACTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACTATTGCGTTGAGGCGGAAATTGACAGCATCTGTTATCTCGTCTTTTCTTGATCATGTTCTTACTCCTGGTTCTGAAGCTCACGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGACGCGGCAACATCTGCTATTCAAACCCCTGTTAAACACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTGCTTGTGCTACTTTTTCTGATTGATCAAAAAAAATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACACAAACAGAAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCCTATAGCTATGAGCTTACAGGAGATCTTGCTGAAATTCGGGGCAACCTCCTTGCTTTGCACCGAATTGCTACCCTGCGTCATGATGAGTTGGGCCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAAAAGTTGAGGTCCAAGGCTCCTCGATTTGAAGCACATTCTAACCAGCAGTTTTGTCGTTATCTCTTCTACCTTGGAAAAATTAGGACAATTCAGTTGGAATATACCGATGCAAAAGAGTCCCTCCTGCAGGCTGCCCGGAAAGCTCCCGTTGCTGCACGGGGTTTTCGTATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTATTAGGAGAAATACCAGAGCGGACTGTCTTTATGCAGAAGGGAATGGAGAAAGCTTTAAGGCCTTACTTTGAGCTTACAAATGCTGTCCGGATTGGGGACTTGGAACTGTTTAGGAATATTGCCGACAAGTTTGCCTCTACCTTTAACGCAGATAGAACCCATAATTTGATTGTTCGTTTGAGGCATAATGTCATCAGGACTGGTTTACGCAATATCAGCATCTCCTATTCCCGCATCTCTCTAGCGGATGTTGCTAAAAAACTGAGGCTGAACTCTGAAAATCCAGTTGCTGATGCTGAGAGCATTGTAGCAAAGGCTATTCGTGATGGGGCAATTGATGCTACATTGGATCATGCCAATGGGTGGATGGTGTCTAAGGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCAGTTCGAGCGCTCCGTTTTCCACCTAACACTCACAaagagaaggaaagtgctgaaaagagaagagagagacaacagcaagagcagGAGCTGGCTAAGCATATTGCAGAGGAGGATGATGATGATTTCTGA 1464 0.4269 MTQDLEMKDRSTPSNSVSAPAPSTLQNLKEIGSLIETGSYSKEVRRIARAVRLTIALRRKLTASVISSFLDHVLTPGSEAHAKLSAYLPKEDDHEMEVDAATSAIQTPVKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASIVWLKNTNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFASTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSENPVADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00242 487 Gene3D - 26 437 - -
Cca07g00242 487 Coils Coil 454 481 - -
Cca07g00242 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Cca07g00242 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Cca07g00242 487 MobiDBLite consensus disorder prediction 1 23 - -
Cca07g00242 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Cca07g00242 487 MobiDBLite consensus disorder prediction 452 487 - -
Cca07g00242 487 SMART PINT_4 345 438 IPR000717 -
Cca07g00242 487 MobiDBLite consensus disorder prediction 452 480 - -
Cca07g00242 487 Pfam PCI domain 311 416 IPR000717 -
Cca07g00242 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Cca07g00242 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Cca07g00242 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00242 Cca-Chr7 3076238 3079856 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00242 K03033 - gmx:100814379 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00242 07 3076238 3079856 Cca07g00242 07 3076238 3079856 ECH
Cca05g00403 05 8798710 8804253 Cca07g00242 07 3076238 3079856 PCT