Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00239 ATGCTGGACTCGGTTCTTCTGGCGCTTTTCTTGCCCTGTCTTGGCATGAGCGCGGTTTTCATTGTCTACATGTGCCTTCTTTGGTACGCCACTACCCGCTACAACCCCGCCAATGACGCCCAACCGGTCAAGCCCGTCGCCGAAAAGGGCCTCTCCGCTTTGGAGTTGGAGAATATCCCCAGAATCACCGGCAAAGAACTCGTCTTGGGCACCGAATGCGCCGTCTGCCTCGACGACATCGAGCCCGAGCAACCGGCCAGGCTGGTTCCCGGTTGCAACCACGGCTTCCATGTCCATTGCGCTGACACCTGGCTCTCCAAGCACCCTTTGTGCCCCGTTTGCCGATCTAGGCTCGACCCTCAATTTTTCACTTCCCAGAACCCCTGCTGA 390 0.5821 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTRYNPANDAQPVKPVAEKGLSALELENIPRITGKELVLGTECAVCLDDIEPEQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRSRLDPQFFTSQNPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00239 129 SMART ring_2 73 114 IPR001841 -
Cca07g00239 129 Pfam Ring finger domain 72 115 IPR001841 -
Cca07g00239 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 121 IPR013083 -
Cca07g00239 129 SUPERFAMILY RING/U-box 72 121 - -
Cca07g00239 129 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Cca07g00239 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Cca07g00239 129 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00239 Cca-Chr7 3057538 3058757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00239 1 129 C3H Transcription Factor Family AT5G42200 57.353 5.26e-49 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00239 K19037 - gmx:100776003 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00239 07 3057538 3058757 Cca07g00239 07 3057538 3058757 ECH
Cca05g00406 05 8858216 8858602 Cca07g00239 07 3057538 3058757 PCT