Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00230 ATGCCTCAAAAACGGGACAACGTGGTGTACCTCCACGGCACCCTCGATTTGGTCATCGTGGAGGCTCGCTTCCTTCCCAACATGGACATGCTCTCCGAGCGCATTCGCCGCTTCTTCTCCGCTCTCAACACCTGCAGCACCTCCATCACCGCCAAGCGGAACAACCGCCACAACCGCTCCCGCCACCGCAAGATCATCACCAGCGATCCCTACGTCACCGTCTGCCTCGCCGGCGCCACCGTCGCCCGCACTCGCGTCATCTCCAACTCCCAGAACCCCTCCTGGGAGGAGCACTTCAAGATCCCGCTGGCGCACCCCGCCGCGCAGGTGGAATTCTACGTCAAGGACAATGACATGTTCGGCGCCGACCTCATCGGAACCGCCTCCGTCTCCGCCAAGAGGATCCTCTCCGGCGAAGCCATCAGCGACTGGTTTCCGATCATCGGCTCCTTCGGGAAGCCGCCGAAGCCTGACTGCGCCGTGCGCCTGGCGATGAAATTCACGCGGTTCGAGGACAATCCCTTGTACCGGTCCGGTCCCAAAATGGATCCGGACCGGTTCGTGGTTCGGGATTCTTATTTCCCGGTTCGGCACGGAGGGGCGGTTACGCTGTATCAGGACGCGCACGTGCCTGATGGGATGTTGCCCGATGTTGAGTTGGATGATGGGATCGTGTTTGAGCATGGCAAGTGTTGGGAAGATATATGCCACGCTATTTTGGAAGCACATCATTTGGTTTATATTGTGGGTTGGTCCATCTTCCACAAGGTTAAGCTCGTCAGAGAGCCTACTAAACCCTTACCTAGCGGTGGCAATTTGAATTTGGGAGACTTGCTCAAGTACAAGTCTGAAGAAGGTTTGCGAGTTTTACTTTTGGTTTGGGATGATAAGACTTCGCACAGCAAATTTTTCATTAACACGACTGGAGTAATGCAAACGCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTACAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGCATGCTTTATGCTATGGTTTAGTTGCTTTCCCAGATTTTGTCATTTTTCTGTTGTTGGAACACTCTTTACACATCATCAGAAATGTGTGATAGTTGATACTCAAGCAAATGGCAATAATCGGAAGATAACTGCATTTATTGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCCGAGCACAGAATTTTACGTGATATTGACACTGTGTATCAGAACGATTATCATAATCCTACATTTTCTTCAGGAACCAAGGGTCCAAGGCAACCATGGCATGATTTGCATTGCAAAATTGAAGGTCCTGCTGCGTATGATATCCTTACCAATTTTGAGCAGCGTTGGAAAAAAGCCTCCAAATGGTCTGAGTTGGGTCGAAAACTTAAAAGAGTGTCTCACTGGCACGATGATTCTTTGATCAAGATAGAACGCATCTCTTGGATTCTCAGTCCTTCTGAATCAATTCCAAATGATGATCCTGAACTATGGGTTACAAAGGAAGACAATCCTCAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCTAAGGATGTATATGTAGCTGAGACTCAGAACCTTGTTTGTGCAAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCTTATATACATGCGATCAGATCAGCTCAACATTTTATTTATATCGAGAATCAATATTTTATTGGATCATCCTTTGCTTGGCCAGCTTACAAAGATGCAGGTGCTGATAACCTAATTCCGATGGAGTTGGCACTGAAGATAGCCAGTAAGATAAGATCCAAGGAGAGATTTACAGTTTATATTGTCATTCCAATGTGGCCCGAAGGGGTCCCTTCTTCTGCTTCTGTGCAAGAGATACTCTTTTGGCAGGGACAAACTATGCAAATGATGTATGAAGTCATAGCTCGGGAGTTAAAATATATGCAGCTAGACGATAGACATCCACAAGATTATCTCAATTTTTACTGTCTTGGAAACCGAGAGAAGTCAACAACTATCTTTCCGAGTTCAAATAATACACCTTCAGATAATGGCGAAACGGTTTCAGCCTCACAAAAGTTCCAACGGTTTATGATTTATGTACATGCGAAAGGAATGATTGTGGATGATGAATATGTGATTCTTGGGTCTGCCAATATCAACCAACGATCTATGGCTGGATCCAGAGATACTGAGATAGCAATGGGTGCATATCAACCCCATCATACATGGAGTGAGAAAAGGGGACATCCACATGGTCAGGTATACGGGTATAGAATGTCTTTGTGGGCAGAACACATGGGGACCATACAAGCTTGCTTTAAGGATCCTGAAAGTTTGGATTGCGTGAATAGCGTGAACAAGATTGCTGAGGACAATTGGAAAAAGTACACATCTTATGAATTTACTCCATTGCAAGGGCACCTTTTAAAATATCCTGTGTCTATAGATGCCAATGGGAAAATTAAGTCATTACCTGGACATGAGTCTTTCCCAGATGTAGGTGGCAAGGTACTTGGCTCCCGGTCAAACCTTCCTGATGCTCTAACTACATAA 2598 0.4592 MPQKRDNVVYLHGTLDLVIVEARFLPNMDMLSERIRRFFSALNTCSTSITAKRNNRHNRSRHRKIITSDPYVTVCLAGATVARTRVISNSQNPSWEEHFKIPLAHPAAQVEFYVKDNDMFGADLIGTASVSAKRILSGEAISDWFPIIGSFGKPPKPDCAVRLAMKFTRFEDNPLYRSGPKMDPDRFVVRDSYFPVRHGGAVTLYQDAHVPDGMLPDVELDDGIVFEHGKCWEDICHAILEAHHLVYIVGWSIFHKVKLVREPTKPLPSGGNLNLGDLLKYKSEEGLRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSTVRCLLSPRYASSKLSIFRQQACFMLWFSCFPRFCHFSVVGTLFTHHQKCVIVDTQANGNNRKITAFIGGLDLCDGRYDTPEHRILRDIDTVYQNDYHNPTFSSGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWKKASKWSELGRKLKRVSHWHDDSLIKIERISWILSPSESIPNDDPELWVTKEDNPQNWHVQVFRSIDSGSLKGFPKDVYVAETQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPAYKDAGADNLIPMELALKIASKIRSKERFTVYIVIPMWPEGVPSSASVQEILFWQGQTMQMMYEVIARELKYMQLDDRHPQDYLNFYCLGNREKSTTIFPSSNNTPSDNGETVSASQKFQRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWSEKRGHPHGQVYGYRMSLWAEHMGTIQACFKDPESLDCVNSVNKIAEDNWKKYTSYEFTPLQGHLLKYPVSIDANGKIKSLPGHESFPDVGGKVLGSRSNLPDALTT 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00230 865 PANTHER PHOSPHOLIPASE D 6 864 IPR015679 -
Cca07g00230 865 CDD C2_plant_PLD 8 168 - -
Cca07g00230 865 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 150 IPR035892 -
Cca07g00230 865 SMART pld_4 367 402 IPR001736 GO:0003824
Cca07g00230 865 SMART pld_4 711 738 IPR001736 GO:0003824
Cca07g00230 865 Pfam Phospholipase D Active site motif 712 738 IPR001736 GO:0003824
Cca07g00230 865 Pfam Phospholipase D Active site motif 368 402 IPR001736 GO:0003824
Cca07g00230 865 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Cca07g00230 865 Pfam Phospholipase D C terminal 786 855 IPR024632 -
Cca07g00230 865 SUPERFAMILY Phospholipase D/nuclease 559 797 - -
Cca07g00230 865 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 367 402 IPR001736 GO:0003824
Cca07g00230 865 Gene3D C2 domain 11 175 IPR035892 -
Cca07g00230 865 PANTHER PHOSPHOLIPASE D 6 864 - -
Cca07g00230 865 Gene3D Endonuclease Chain A 532 759 - -
Cca07g00230 865 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 711 738 IPR001736 GO:0003824
Cca07g00230 865 SUPERFAMILY Phospholipase D/nuclease 190 475 - -
Cca07g00230 865 Pfam C2 domain 13 147 IPR000008 -
Cca07g00230 865 Gene3D Endonuclease Chain A 226 484 - -
Cca07g00230 865 SMART C2_3c 14 144 IPR000008 -
Cca07g00230 865 PIRSF PLD_plant 1 865 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00230 Cca-Chr7 2941947 2947796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00230 6 694 Phospholipase D Gene Family (Wang group) AT4G35790 65.106 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00230 K01115 - gmx:100795859 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00230 07 2941947 2947796 Cca07g00230 07 2941947 2947796 ECH