Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00227 ATGGGAGATACAGAATCTTGCAGCAGCGGAATCTTCAATTCAGGATGGAATCAATGTCCGAAACAGAAGCACAAGGTTGGAGTCTACAACGAGGTTTTATGTAGGCTTAAGGAATTGAATGTCGCAGAGGCTGTGGTTCCTGGTTTCGAGGACGAGCTTTGGGCGCACTTCTATCGCCTTCCCACTAGATATGCATTGGACATGAACGTGGAAAGGGCCCAAGACGTTCTTATGCATAAAAGATTACTGGACATCGCACGAGCCCCAACTACAGCAACCGGACCTGCCGTACAAGTTCGTCTTGTACAGATTGGTTCTACTGCTGCTGATCGTTCTAGTAAATCATTTCTTTCACACTCACAAAGTAAAGTTTGTCCTGAAGATTCCGGTATTCCGGGCAACATGAGCTTCCATCCTCTCCCGGCCTTCGGTTCATCAGCTAATGTGGAACTTACTCTTGGCAAGAGGCAATTACAAGTTCGAGACAGAGATAACTACTTGAATTTTTATGCACATTATGCCGGGCCCATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTTTGCCAGTTGACTTCCTTATTATCTGAGACTGGACTGGACATTCAAGAAGCACATGCTTTTTCAACAATAGATGGCTATTCATTGGATGTTTTTGTTGTTGGTGGTTGGGTAGTAGAGGGGACAGAGAAATTAAAACATGAACTAGTTAAGAAAATTCAAAAGCTCCAGGACATTTGGAAGCAACTTCAATTGAAAGAAAATGGGAGTCTTATTACTGCAAAGCAAGAGCAAACCAGGATGAACTTTATTTGGAGAATTGGTGCTGGGTGTTTGAGATATGAAAAAATAATTGCATCTGGACCTTTCAGTGATTTGTACAAAGGTACGTTTTGCAATCAAGATGTAGCTATCAAGGTCCTTAAGCACGAGAATTTTAATGAAAATATACAAAGGGAATTTGCTCAGGAAGTGTATATCTTAAGTAAAATTCATCACAAGAATGTTGTCAAATTTGTTGGGGCTTGTACAAAACCCCCAAACCTATACCTTGTAACAGAATACATGTCTGGTGGAAGTATGTTCGACTTTTTGCATAAACAAAAGACTGTCCTTGATCTTCCATCTTTACTCAAAGTAGCCATTGATGTTTCTGAAGGAATGAAATATTTACATCAAAATGATATCATACATCGGGACCTCAAAGCAGCTAATCTTTTGATAGATGAGAATTGGGTAGTTAAGGTTGCCGATTTTGGTGTAGCTAGAGTTCACAATCAGTCTGGTATCATGACTGCAGAAACTGGAACTTATCGATGGATGGCTCCAGAGGTCTGTATATACTTATGA 1359 0.404 MGDTESCSSGIFNSGWNQCPKQKHKVGVYNEVLCRLKELNVAEAVVPGFEDELWAHFYRLPTRYALDMNVERAQDVLMHKRLLDIARAPTTATGPAVQVRLVQIGSTAADRSSKSFLSHSQSKVCPEDSGIPGNMSFHPLPAFGSSANVELTLGKRQLQVRDRDNYLNFYAHYAGPMHEITISTNDKPKLLCQLTSLLSETGLDIQEAHAFSTIDGYSLDVFVVGGWVVEGTEKLKHELVKKIQKLQDIWKQLQLKENGSLITAKQEQTRMNFIWRIGAGCLRYEKIIASGPFSDLYKGTFCNQDVAIKVLKHENFNENIQREFAQEVYILSKIHHKNVVKFVGACTKPPNLYLVTEYMSGGSMFDFLHKQKTVLDLPSLLKVAIDVSEGMKYLHQNDIIHRDLKAANLLIDENWVVKVADFGVARVHNQSGIMTAETGTYRWMAPEVCIYL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00227 452 PRINTS Tyrosine kinase catalytic domain signature 439 449 IPR001245 GO:0004672|GO:0006468
Cca07g00227 452 PRINTS Tyrosine kinase catalytic domain signature 356 369 IPR001245 GO:0004672|GO:0006468
Cca07g00227 452 PRINTS Tyrosine kinase catalytic domain signature 393 411 IPR001245 GO:0004672|GO:0006468
Cca07g00227 452 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 8 449 - -
Cca07g00227 452 SUPERFAMILY Protein kinase-like (PK-like) 265 450 IPR011009 -
Cca07g00227 452 ProSiteProfiles Protein kinase domain profile. 282 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00227 452 SUPERFAMILY ACT-like 177 243 IPR045865 -
Cca07g00227 452 SMART serkin_6 282 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00227 452 ProSiteProfiles ACT domain profile. 179 257 IPR002912 -
Cca07g00227 452 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 449 - -
Cca07g00227 452 CDD STKc_MAP3K-like 288 448 - -
Cca07g00227 452 Gene3D Phosphorylase Kinase; domain 1 277 359 - -
Cca07g00227 452 Gene3D Transferase(Phosphotransferase) domain 1 360 451 - -
Cca07g00227 452 Pfam Protein tyrosine and serine/threonine kinase 283 449 IPR001245 GO:0004672|GO:0006468
Cca07g00227 452 Coils Coil 229 249 - -
Cca07g00227 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00227 Cca-Chr7 2905583 2917100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00227 1 448 MAP Kinase Kinase Kinase AT4G38470 53.632 1.09e-160 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca07g00227 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00227 - - gmx:100818047 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00227 07 2905583 2917100 Cca07g00227 07 2905583 2917100 ECH