Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00226 ATGTCATCGGTGGTGGCAAGAACCAACGGCGAGGACGGAAAGCACTACCCTGCTCCACTCTCCCCTCACGAGGATGTAGTGAAGGACTCCACTCTCTTCTGGGACACTCTAAGGCGCTTTCACTTTGTCATGGGCACCAAATTCATGATTCCTGTTATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTACGAGAAGGTTGTCGCAGAGAAAAAATGGAGGGAAGTTGGTAGTGTTTTCAGATTCTCAGCTACGACCACAAGCGCATCTTTTGTACTCAGAAAACATTACTTCAGTCTTCTTTTTCATTATGAACAAGTTCACTTCTTTAAAGCTCGGGGTCCTATCTATACCCCACCACCAGATGCATTTTCCGGCAACAGCCCCTCGTGGAGACCTGAATTAGCTATTGTGGAATATTCGCCTAAGCCTACAAATAATGGTCCTGAGTCTTATGTTAAAGATACTTCATGTCTTTCAGGAAATGGAACTATTGAGGGAAAATTTGACTGTGGTTATTTAGTGTCGGTGAAACTTGGTTCAGAAGTTCTTAGAGGGGTGCTTTACCATCCCGAACATTTGGTTCCTCCTCCGTCAATTCCACAACATGAGAATGCAATTGTACCATTCAACCGCAAACCTCACCGTTCTGGTCGAAGGAGGAGAAACAAAAGAAGGTGGGACCCCAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACAGTCTCAAATCTCTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCTGAAGAAAGAACGGTTTACCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACGGAATACAAAGAGAAGATGAAGCTTAGGACCCCAGAAGCTGCACGTCCATAG 966 0.4451 MSSVVARTNGEDGKHYPAPLSPHEDVVKDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSATTTSASFVLRKHYFSLLFHYEQVHFFKARGPIYTPPPDAFSGNSPSWRPELAIVEYSPKPTNNGPESYVKDTSCLSGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEHLVPPPSIPQHENAIVPFNRKPHRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKSLYPNREREFTKMIGQSWNSLSPEERTVYQNIGLRDKERYKRELTEYKEKMKLRTPEAARP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00226 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 318 - -
Cca07g00226 321 SMART bright_3 28 119 IPR001606 GO:0003677
Cca07g00226 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 318 - -
Cca07g00226 321 Pfam ARID/BRIGHT DNA binding domain 32 114 IPR001606 GO:0003677
Cca07g00226 321 MobiDBLite consensus disorder prediction 222 236 - -
Cca07g00226 321 MobiDBLite consensus disorder prediction 1 20 - -
Cca07g00226 321 CDD HMGB-UBF_HMG-box 241 304 - -
Cca07g00226 321 Gene3D High mobility group box domain 225 317 IPR036910 -
Cca07g00226 321 SMART ARID_2 24 114 - -
Cca07g00226 321 MobiDBLite consensus disorder prediction 221 241 - -
Cca07g00226 321 SMART hmgende2 240 309 IPR009071 -
Cca07g00226 321 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Cca07g00226 321 SUPERFAMILY ARID-like 24 127 IPR036431 GO:0003677
Cca07g00226 321 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Cca07g00226 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Cca07g00226 321 Gene3D - 21 123 IPR036431 GO:0003677
Cca07g00226 321 SUPERFAMILY HMG-box 238 311 IPR036910 -
Cca07g00226 321 Pfam HMG (high mobility group) box 241 308 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00226 Cca-Chr7 2900371 2902860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00226 14 314 ARID Transcription Factor Family AT1G76110 67.857 2.08e-135 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca07g00226 ARID 3.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00226 - - gmx:100784746 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00226 07 2900371 2902860 Cca07g00226 07 2900371 2902860 ECH