Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00198 ATGATGGGAGATGGTGGTGTGACATCATCTGGTACCATGATGGAAGCTCCACCACCTGATGGAACTACTTCAATGGATTTTGAGTACATGGGTGAGCTTTTCTTAGATGGGTGTTGGTTGGAGGCCTCTGCTGATGGATCTGAGTTCTTGCTGCAAAGTCCTTCCTTTTCCAATTCTCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATGAATCCCATGATGCTGCTTTTGGGACTCAACAAGAAAGCCACAACAGCATGGTTAATATTGTTTCtggtggtggtggtggtagtggtATGCAGTTTCAGTTTGATGCTCATTCAGTTGAAGGAGCATCTGAAGGGGTTAAAAGGTGGTGGTTTGCACCCACACCTAGTCCTGGACCTGGGCCTTCTATAACAGAGAAGCTGCTAAGGGCCCTCACCTGGTTCAAAGATTACAATAGGAACAAGGATATGCTGATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGGCCTATTCTGGCTGCTAATGATCTTCTGTTCTCGCTTGAATCAAGGTCTGTGAACCTTGCAAAGTACCGCGAAATTTCGGTGGGATATGAGTTTTCAACAGATGAGGGTGAGTCCAAGGAGTTGGTTCCGGGATTGCCGGGTCGAGTGTTCAGGAACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTTTTTAAGAGTGATGAGTATCCCCGAGTTGACCATGCTCAAGAGTATGATGTGAGTGGGACACTAGCAGTTCCAATCTTTGAGCAAGGGAGCAAGATGTGCTTGGGGGTTATTGAGGTTGTCATGACTACTCAGCAGATCAACTATGGCCCTGAACTTGAGAGTGTTTGTAAAGCGCTTGAGGCTGTTGATCTTAGAAGCTCGAAACATTCAAATATTCAGATTGTGAAGGCATGCAACAGGTCCTATGATGCTGCACTACCTGAGATTCAAGAGGTTCTGAGATCTGCATGTGAAATGCACAACTTACCTTTAGCTCAAACTTGGATTCCATGTGTCCAACAAGGCAAAGAAGGGTGCCGGCACTCTGATGATAATTATCTACTCTGCATATCTCCTGTGGAGCAGGCTTGTTATGTTCGTGATCCCTCTATCAGGCCTTTTCATGAGGCTTGCACTGAGCATCACTTGTTAAAAGGTGAAGGTGTTGCTGGTGGAGCTTTTATGACAAACCAACCATGCTTCTCAACTGACATAACTTCATTAAGCAAGAAAGATTATCCACTGTCTCATCATGCGAGGTTGTTAGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTATAATAGCACCGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAGCAGAGGAAGATGCTTACTTCATTGTCCATTATTATACAAAGGGTGTGTTGCAGCTTGCGGGTTATATCAGATAAGGAATTGGAGGAAGCTAACTTGTCAGTTGATGAAGTGATTGGCCTTGCAGATAGTGGAGTTTCCAGGACTGCAATTTGTTCAGGACTGCAACAAAAAGAAAAATCAAGTGAAACTATGTGTAGAAAATTCTCTGACCTGAGGCAACAAGAAAACCCTATTTTAAAAGGAAACCTTGATTGTGTTAGGGAGTGTTCTACTTCTGTTGAGGGTAACTTCTCAGGTGCAGGAATAAGTAGAACGGTAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACTCTGCAAGTTCTTAGACAATATTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAATATTGGTGTTTGCACAACAACTTTGAAGAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCTTCTCGGAAGATCAAAAAGGAACCAGCCTGTTCTCAACTTTGA 1905 0.4404 MMGDGGVTSSGTMMEAPPPDGTTSMDFEYMGELFLDGCWLEASADGSEFLLQSPSFSNSLFDPSFSWPALETNHNESHDAAFGTQQESHNSMVNIVSGGGGGSGMQFQFDAHSVEGASEGVKRWWFAPTPSPGPGPSITEKLLRALTWFKDYNRNKDMLIQIWVPVHRGGRPILAANDLLFSLESRSVNLAKYREISVGYEFSTDEGESKELVPGLPGRVFRNKVPEWTPDVRFFKSDEYPRVDHAQEYDVSGTLAVPIFEQGSKMCLGVIEVVMTTQQINYGPELESVCKALEAVDLRSSKHSNIQIVKACNRSYDAALPEIQEVLRSACEMHNLPLAQTWIPCVQQGKEGCRHSDDNYLLCISPVEQACYVRDPSIRPFHEACTEHHLLKGEGVAGGAFMTNQPCFSTDITSLSKKDYPLSHHARLLGLRAAVAIRLRSIYNSTDDFVLEFFLPVDCNDSEEQRKMLTSLSIIIQRVCCSLRVISDKELEEANLSVDEVIGLADSGVSRTAICSGLQQKEKSSETMCRKFSDLRQQENPILKGNLDCVRECSTSVEGNFSGAGISRTVERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKEPACSQL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00198 634 PANTHER PROTEIN NLP8 22 627 IPR045012 GO:0003700
Cca07g00198 634 Pfam RWP-RK domain 580 627 IPR003035 -
Cca07g00198 634 Gene3D - 179 294 IPR029016 -
Cca07g00198 634 ProSiteProfiles RWP-RK domain profile. 567 634 IPR003035 -
Cca07g00198 634 MobiDBLite consensus disorder prediction 1 25 - -
Cca07g00198 634 PANTHER PROTEIN NLP4 22 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00198 Cca-Chr7 2545944 2549127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00198 25 627 NLP Transcription Factor Family AT1G20640 52.327 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca07g00198 RWP-RK 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00198 - - gmx:100785135 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00198 07 2545944 2549127 Cca07g00198 07 2545944 2549127 ECH