Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00195 ATGAGTTGCTTTTCGTGCTTTGATGTGAGGAGGGTTGAAATCGATAATGGCGCTCGATctgctactgcttctgctactgctaatgctacCTCTTCAGAGGGTGAAAGGAGGAGAGAATCCTCAGAGGGGAAGGGGAAGAGTGTGAGTAGTAGCAAAGGAAATACGGCAGCGGCTAGTTTTGGCTTTCGCGAACTCGCAGCGGCAACGAGGGGTTTCAAGGAAGTTAACTTAATCGGGGAAGGTGGTTTTGGTAGGGTTTACAAGGGTCGTCTTTCAACGGGGGAGCTTGTTGCGGTGAAGCAATTGAGTCATGATGGGAGGCAAGGTTTTCAGGAATTTGTGACGGAGGTTCTTATGTTGAGCCTGCTGCATCATTCTAACCTTGTTAAGTTAATTGGTTACTGCACTGATGGGGATCAGAGGCTTTTGGTTTATGAGTACATGCCCATGGGTTCACTCGAAGATCATCTTTTTGATCCTAGCCAAGACAAAGAGCCTCTAAGTTGGAGTGCTCGAATGAAGATTGCTGTTGGAGCTGCTCGTGGCCTTGAGTATCTCCATTGTAAAGCGGATCCACCTGTAATCTACAGAGACTTGAAATCTGCGAACATCTTATTAGATAATGAATTCAACCCAAAACTATCAGATTTTGGGCTTGCTAAACTCGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCGCCAGAGTATGCCATGAGCGGCAAACTAACTCTTAAATCCGATATCTATAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGGGCAATAGATGCTTGTAGAAAACCAGGAGAGCAAAACTTGGTTTCATGGTCTCGTCCATATTTCAGTGACCGGAGAAAGTTTGTACACATGGTTGACCCTCTTTTACAAGGAAACTTCCCCTTGCGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTTCAGGAGCAACCGAAATTCCGTCCACTTATTGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGAGTATTCCTGAAGTCCATAGACATGGTGGGCGCAGCCCACCACAGCAACCATCTTCAGAAATGGACAGAAATTAA 1128 0.4433 MSCFSCFDVRRVEIDNGARSATASATANATSSEGERRRESSEGKGKSVSSSKGNTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDPSQDKEPLSWSARMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDACRKPGEQNLVSWSRPYFSDRRKFVHMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSIPEVHRHGGRSPPQQPSSEMDRN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00195 375 SUPERFAMILY Protein kinase-like (PK-like) 53 346 IPR011009 -
Cca07g00195 375 SMART serkin_6 72 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00195 375 PANTHER OS07G0668900 PROTEIN 1 362 - -
Cca07g00195 375 MobiDBLite consensus disorder prediction 19 54 - -
Cca07g00195 375 CDD STKc_IRAK 78 346 - -
Cca07g00195 375 MobiDBLite consensus disorder prediction 356 375 - -
Cca07g00195 375 Gene3D Phosphorylase Kinase; domain 1 30 147 - -
Cca07g00195 375 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Cca07g00195 375 Pfam Protein kinase domain 72 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00195 375 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Cca07g00195 375 ProSiteProfiles Protein kinase domain profile. 72 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00195 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cca07g00195 375 PANTHER OS07G0668900 PROTEIN 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00195 Cca-Chr7 2479872 2483758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00195 1 371 Glycoside Hydrolase AT3G07070 57.784 5.10e-152 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca07g00195 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00195 - - gmx:100796595 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00195 07 2479872 2483758 Cca07g00195 07 2479872 2483758 ECH