Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00192 ATGAAAGGAGGCAAGTCCAAAACCGAATCTAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGTGCCGCCACCAAGGCTAGGAAACCTGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAACAATTCAACAAGGAAAATCCTGACAACAAAGCGGTGTCCGCTGTGGGCAAAGCTGCTGGAGCCAAATGGAAGTCGATGTCTGATGCTGAGAAAGCGCCCTATGTGGCAAAGTCTGAGAAACGGAAAGTGGAGTATGAGAAGAGCATGAGGGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAGGAATCTGAGAAATCAGTATCTGAGGTGAATGACGAGGATGATGATGAGGAGGGCAGTGGCGAGGAGGAGGATGACGATTAA 459 0.5011 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKSEKRKVEYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00192 152 MobiDBLite consensus disorder prediction 130 152 - -
Cca07g00192 152 CDD HMGB-UBF_HMG-box 44 110 - -
Cca07g00192 152 MobiDBLite consensus disorder prediction 78 152 - -
Cca07g00192 152 MobiDBLite consensus disorder prediction 93 129 - -
Cca07g00192 152 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Cca07g00192 152 Gene3D High mobility group box domain 27 123 IPR036910 -
Cca07g00192 152 MobiDBLite consensus disorder prediction 1 18 - -
Cca07g00192 152 MobiDBLite consensus disorder prediction 1 50 - -
Cca07g00192 152 Coils Coil 95 115 - -
Cca07g00192 152 SMART hmgende2 43 114 IPR009071 -
Cca07g00192 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 151 IPR031061 -
Cca07g00192 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 151 - -
Cca07g00192 152 SUPERFAMILY HMG-box 32 118 IPR036910 -
Cca07g00192 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00192 Cca-Chr7 2449089 2451692 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca07g00192 HMG_box 2.5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00192 K25507 - gmx:547975 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00192 07 2449089 2451692 Cca07g00192 07 2449089 2451692 ECH