Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00190 ATGCAATTGTGTGAGGCAAAGAGCAGAGAAGCAATGGAGGGAGAGCATCTGGAGGAGGTCTCAAACAGCCTTTATGTGAAGGTTATGACAGACGAGCAAATGGAGCTTCTGAGGCAACAGATATCTGTCTACGCCACAATCTGCGAACAGCTTGTTGAGATGCACAAAGCTGTAACCACCCAACAAGACCTCGCAGGATTGAGGCTGGGTAACTTGTACTGTGATCCCATGATGGCGTGTTCTGGACACAAGATAACTGCCAGGCAGCGTTGGACTCCGACGCCTCTGCAGCTTCAAATTCTGGAGAGGATTTTTGATGAGGGAAATGGCACCCCCACCAAACAGAAGATCAAAGAGATAACCATTCAGCTTGGACAACATGGCCAAATATCAGAGACAAATGTTTATAACTGGTTCCAGAACAGAAGAGCTCGTTCTAAGCGCAAGCAACTCGCTCCCGCACCAAATCTTGTAgagcctgagcctgagcctgagcctgagcctgaAGTTGACTCTCCAAAAGACAAAAAGACACGCCCAGAAACCCCTCACCTTCAACCCTATGACAGTTCCTCACCTCATAGGATCAAGGATATGTACATCCAGAGTCCTGACATAGGATTTGACCAATTGATGGCTAAAATAGAAGTTGCGGGCTGCTATAGTTCTTATTTTCTTTGA 681 0.442 MQLCEAKSREAMEGEHLEEVSNSLYVKVMTDEQMELLRQQISVYATICEQLVEMHKAVTTQQDLAGLRLGNLYCDPMMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPTKQKIKEITIQLGQHGQISETNVYNWFQNRRARSKRKQLAPAPNLVEPEPEPEPEPEVDSPKDKKTRPETPHLQPYDSSSPHRIKDMYIQSPDIGFDQLMAKIEVAGCYSSYFL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00190 226 PANTHER WUSCHEL-RELATED HOMEOBOX 13 12 226 IPR044559 GO:0003700
Cca07g00190 226 Gene3D - 89 152 - -
Cca07g00190 226 SUPERFAMILY Homeodomain-like 87 150 IPR009057 -
Cca07g00190 226 CDD homeodomain 88 150 IPR001356 GO:0003677
Cca07g00190 226 SMART HOX_1 86 153 IPR001356 GO:0003677
Cca07g00190 226 MobiDBLite consensus disorder prediction 147 197 - -
Cca07g00190 226 ProSiteProfiles 'Homeobox' domain profile. 84 149 IPR001356 GO:0003677
Cca07g00190 226 MobiDBLite consensus disorder prediction 167 183 - -
Cca07g00190 226 Pfam Homeodomain 88 148 IPR001356 GO:0003677
Cca07g00190 226 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 12 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00190 Cca-Chr7 2391643 2393461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00190 24 224 Wox Gene Family AT4G35550 53.304 3.11e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca07g00190 Homeodomain 5.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00190 - - gmx:100820530 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00190 07 2391643 2393461 Cca07g00190 07 2391643 2393461 ECH