Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00189 ATGGCGGCGCCGAACATGGATCAGTTCGAAGCGTATTTCAGGAGAGCAGATTTGGACGGAGATGGCAGAATCAGTGGAGCCGAAGCTGTCTCTTTCTTTCTGGGATCCAATTTGCCCAAACCAGTCCTCGCTCAGGTATGGGCGTATGCTGATCAGGCTAAAACTGGTTTCCTTGGGCGCGCGGAGTTTTTTAACGCTCTGAGGTTAGTAACTGTGGCTCAGAGTAAGCGAGATTTAACGCCTGATATTGTGAAGGCAGCGTTGTTTGGTCCTGCTGCTGCTAAAATCCCTGCACCGCAGATTAATCTTGCTGCGATTCCTCAACCGCAGCAAAATCCGAGGCCCGGTGCTGGTTCTGTTGGGCAGATGGGTGTTACTGCACCACCCACGTCAGCTCAGAGTTTTGCCTATAGAGGACAAGGGTTGGCAGGTCCTGTTGCAAACCCACAATATTATCCTTCGCAGCAGAATCCTGCCCTGAGACCTCCTCAATCCATGCCTGCTAGTGGCGGTCCGCATCCACAACAGGGTGTTGCAGGTTCACGTCCGCAACAAAGTATTCCAGGTCTGCTACCACAACAAGGTGTTCCAGGTCTGCAACCACAACAGGGTGTTCCAGGTCCACGTCCACGTCCACAACAGGGTGTTGCAGGTCCGGATATCACTAGAGGAGTTAACATGGGTGGTCACAATTTCTCAAATCCTGGGGGCTCGAATGATTGGAGTGGAAGGCCTGGTACGGTTGCTACCAGACCTGCAGGAATCACTCCGTCAGCTGCCTTACCATCCTCAACATCGCCGGTCTCGCCAATGCCCCAGCCAACAACTGTTAACACTAGAGCATTAGGTGTTTCTGGAAATGGTTTCTCTTCCAATTCAGTTTTGGGCAATGATTTCTTGTCTGCTGCCTCATCCACACCGAAACAAGAACCTGCTGGACAGGGTTATTCTGTTAGCAATGTCTCATCAGCAATTGTTCCTGTTTCCACTGGTGCCCAACCTGCAAGTAGGCAAAATTCACTTGATTCATTGCAGAGTGCATTCTCGTCAATGCTGCCTGCAAATAGTCAGTTACAGCGGGCACAGTCTCCATCAAACAGAAGCCAGCAAATCTCACCACCGGCTTCTTCTCCGCATACCCCATCTGGAATGACAGTTGGATTTGGGAATGCAAATTCAGACAATTCACAGAATTCTTGGCCAAAAATGAAACCTTCTGATGTGCAGAAGTATACAAAGGTGTTTATGGAAGTCGACACTGACAGGGATGGGAAAATCACTGGGGAGCAGGCACGCAGTCTATTTTTAAGCTGGAGATTGCCAATAGATGTCTTAAAGAAGGTGTGGGACTTGTCTGATCAGGACAATGATAGCATGCTTTCTTTGAAGGAGTTCTGCTTTGCTCTTTATTTGATGGAACGGTTCAGGGAAGGTCGCCCTCTTCCACAGTCTCTTCCAAGCAATGTTATGTTTGACGAGACACTGATGTCTATGACAGGCCAACCAAAAATTGCTTATGGAAATGCAGCCTGGGGTACTGGCCAAGGTTTTCAGCAGCAACAAGGGATGCCAGGTGCTCGGCAAGTTGCACCAACAGCTGGTTTGAGGCCACCTGTGCATGGAAGTTCTGCCCGGGCTGATGGCATAACTCAGTCCAATCAGCAAAAGTCAGGAACACCTGTGTTGGAAGATTCCTTTTTGAACCGCACAGATAATGGTGAGCAAAATATATTGAACTCAGATCCTCAAGGGGATATGACCGCAGAGAAAAAGTCTGAAGAAACTCAGAATGTGATTTTGGATTCAAAAGAGAAGATCGAGTTTTACCGCAACAAAATGCAGGAACTGGTTCTGTATAAAAGCAGATGTGATAATCGACTAAATGAGATTACAGAAAGGGCATCAGCAGATAAGCGTGAAGCAGAATCATTGGGCAAGAAATATGAAGAGAAATACAAACAAGTAGCAGAAATAGCATCGAAATTGACTGTAGAAGAAGCTAAGTTTCGTGATATACAGGAAAGGAAGGTGGAGTTGCAGCAAGCCATTGTCAAAATGGTACAAGGAGGCAGTGCAGATGGTATTCTTCAGGTCCGTGCTGAACGCATACAGTCAGATCTTGAGGAGTTATTTAAGGCTCTAGCTGAACGTTGCAAGAAACATGGGATAGATGTGAAGTCAATTACAATGGTTCAGCTTCCTGCTGGTTGGCAACCTGGAATTCCAGAGGAATCAGCTCTTTGGGATGAAGATTGGGATAAGTTTGAGGATGAAGGATTTGCTAATGATCTCACTTTTGATACAAAGAATGCATCTTCAAAACCAAAACCTGCATTAATTCACGGAGAGCAAAATTTTGCTGATGATAATTCTGTACTTGGTTCACCTGTGAACGCAAATGGGAAGCAAGAACATTCTGTTAATGGTGATTATACAGTTGAGGATGAATCCTATGCACACAGTGAAGATGAGTTGGCAAGAAGCCCCCATGATAGTCTAGCTAGGAGGAGCACAGTGGGGAGTCCTTCTCAAGACTTTTCAAATGATCATTTTAAAGGTTCTGAAGCAGATGCAGAAACACATAGAAGTTTCGATGAATCAACCTGGGGGGCATTTGACAACGATGATGTCGACTCTGTGTGGGGTTTTAACACTAAGCCCAAGGAATCTGACTTCGAGCAGAGAGATTTCTTTAAATCTGATGATTTTGGTCTAAACCCAGTTAGAACAGGATCTACACATACAGATGGCATGTTCCAGACAAAAAGCCCATTTACTTTTGATGATTCAGTGCCTGCAACTCCAGTTTCCAAGTTCGAAAACTCTCCGAGGTACAGTGAGGCAGGGGATCACTTCTATGACATGTCAAGGTTTGATTCCTTTAGGCATGAAGGTGGGTATTCTCCACAACCAGAGGGGCTCACGAGATTTGATTCCATAAGTAGCAGCAAGGATTTTGGCTTCGGTAACGACAAATTCACAAGGTTTGATTCCATGAGTAGCAGTAACGATTTCGGCTTTGGTCATCAGGGGCATGCAAGGTTTGACTCAATCAGTAGCACCAAGGACTTCGGTCACAGTGGTCCATTCTCTTTCGATGACTCTGATCCCTTCGGCTCCTCTGGCCCTTTTAAGCTCAACTCAACTCAACAACCTCTCTTCTCCGGTTCGGCTCCTGCAATTCCAACTATTTACCATGGCACAACGCCAATTACGCTGCAAAATCAACTTTGCGTTAAGGGTTTCTCTTCAATTTTCAAACTAGAAAGTAAAAGAAGGATTTTTTTTTTTTCTGGCTCGCTGCTTCTTGGAACTCCGACACAGATTACTAGATATATAATGGCTGCGAGCTGGGATGGAAGTAATGACCCTGGCAGTCAGTCGGAAGATAGCCTTCATTTTGATAGGTTGCATATTGAGCCTCTTTATGATGCCTTTGTATGTCCGCTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGACAAACTTTTGAACGTCAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGGAAACTGGTTTGCCCTTTGACTCTGCAGGAGTTAAGAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAGGAGTGGACTGCCAGGAATGAAACTGCACAACTGGATATAGCTCGCCGGTCATTGAATATGGGGAGTCCAGAGAACGAAACTCTTCAGGCCTTAAATTATATCCAGCACATCTGCCAAAGAAGTCGATCCAATAAATACATGGTCCGGAATACAGGGCTTATACCAATGATTGTTGACATGTTGAAGAGTAGCACTCGCAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAGTTGTGGTAGAGGAAGATGATGAGAATAAGGAATTGTTGGCTGAAGGGGATATTGTGCGTACTGTAGTGAAATTCCTTTCACACGAACTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTATGAGCTTTCAAAATCTGCAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCCATTCTTATATTAGTAGGAATGACAAGCAGCAAATCAGAAGATCTTCACACTGTTGAGAAGGCTGATAAAACGTTGGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTTTAACCCAGCTTCATGAAGGGCCACCAGAAACCAAACTCTCCATGGCTGCATACCTTGGTGAGCTGGTTTTAAACAATGATGTTAAAGTCCTTGTTGCTGGAGCTGTGGGTTCATCTCTGATCAATATGATGAAAAGTGGTAATATGCAATCAAGAGAAGCTGCACTGAGGGCACTAAATCAGATATCATCGTGTGAACAAAGTGCGAAGATTTTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCCGTGGGCCCTAATCAGCTTCCCACACGATTAAAGGAGATCTCTGCTACAATTCTTGCCAGTGTCGTAAACTCAGGAGAAGACTTCTTTTCCATTCCATTTGGACCTGATCACCAGACTCTGGTCTCAGAGGATATAGTTCGTAATCTGCTCCATCTTATAAGTAACACTGGTCCAGCAATAGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTATTTCCCAAACTACAGTTCACAGTGTTGTGGCTGCTATCAAAAGCTCTGGTGCCACCATTAGTCTAGTTCAGTTCATTGAGGCACCGCAGAAAGATCTGCGTGTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAGCGGATGCATTACGCGGCTCAGTTGGACAGCTTGGTAGTCTAATTAGAGTCATAGCAGAAAATACAGGAATCACCGAAGAACAAGCAGCGGCTGTCGGCCTTTTAGCCGAACTACCAGAAAGGGACTTGGGCCTCACAAGACAGCTTCTAGATGAAGGTGCATTTGTGATGGTCATATCCAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGCACTCGTTTCATGACTCCATTTCTCGAAGGGCTTGTAAAGATTGTTGCGAGGGTTACATATGTCTTGGCCGAAGAGGCTGATGCCATTGCACTCTGCCGTGATCACAATCTCGCTGGGCTCTTCATTGATCTGCTTCAGTCCAATGGACTTGACAATGTTCAGATGGTTTCAGCCACAGCTCTGGAGAATTTATCCCAAGAATCGAAAAATCTAACCAAATTGCCCGAAATACCACCACCGGGATTTTGCGCTTCAATGTTTTCATGCTTCATCAAGCAGCCTGTCATAACTGGATTATGTCGGCTCCACCGAGGGATGTGTTCTCTAAAAGAAACATTTTGTCTCTATGAAGGGCAGGCGGTGCTTAAGTTAGTAGGTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCATTGTCTACTTTGATAGATGATGGGGTGGATATTGAGCAAGGTGTGGCAATTTTGTGTGAAGCAGATGGAGTGAAGCCTATACTTGATGTGCTACTTGAGAAAAGAACAGAAACTTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGATTATTGAGAACAGATGATATAGCCTATGAAGTTTCTGGGGACCAAAATGTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGGGACTATCGAACTAGACAGACAGCTGAGCGAGCCCTTAAACATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCCAAACATGGCATAA 5781 0.4523 MAAPNMDQFEAYFRRADLDGDGRISGAEAVSFFLGSNLPKPVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALFGPAAAKIPAPQINLAAIPQPQQNPRPGAGSVGQMGVTAPPTSAQSFAYRGQGLAGPVANPQYYPSQQNPALRPPQSMPASGGPHPQQGVAGSRPQQSIPGLLPQQGVPGLQPQQGVPGPRPRPQQGVAGPDITRGVNMGGHNFSNPGGSNDWSGRPGTVATRPAGITPSAALPSSTSPVSPMPQPTTVNTRALGVSGNGFSSNSVLGNDFLSAASSTPKQEPAGQGYSVSNVSSAIVPVSTGAQPASRQNSLDSLQSAFSSMLPANSQLQRAQSPSNRSQQISPPASSPHTPSGMTVGFGNANSDNSQNSWPKMKPSDVQKYTKVFMEVDTDRDGKITGEQARSLFLSWRLPIDVLKKVWDLSDQDNDSMLSLKEFCFALYLMERFREGRPLPQSLPSNVMFDETLMSMTGQPKIAYGNAAWGTGQGFQQQQGMPGARQVAPTAGLRPPVHGSSARADGITQSNQQKSGTPVLEDSFLNRTDNGEQNILNSDPQGDMTAEKKSEETQNVILDSKEKIEFYRNKMQELVLYKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIASKLTVEEAKFRDIQERKVELQQAIVKMVQGGSADGILQVRAERIQSDLEELFKALAERCKKHGIDVKSITMVQLPAGWQPGIPEESALWDEDWDKFEDEGFANDLTFDTKNASSKPKPALIHGEQNFADDNSVLGSPVNANGKQEHSVNGDYTVEDESYAHSEDELARSPHDSLARRSTVGSPSQDFSNDHFKGSEADAETHRSFDESTWGAFDNDDVDSVWGFNTKPKESDFEQRDFFKSDDFGLNPVRTGSTHTDGMFQTKSPFTFDDSVPATPVSKFENSPRYSEAGDHFYDMSRFDSFRHEGGYSPQPEGLTRFDSISSSKDFGFGNDKFTRFDSMSSSNDFGFGHQGHARFDSISSTKDFGHSGPFSFDDSDPFGSSGPFKLNSTQQPLFSGSAPAIPTIYHGTTPITLQNQLCVKGFSSIFKLESKRRIFFFSGSLLLGTPTQITRYIMAASWDGSNDPGSQSEDSLHFDRLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFERQAIEKWFKECKESGRKLVCPLTLQELRSTELNPSMALRNTIEEWTARNETAQLDIARRSLNMGSPENETLQALNYIQHICQRSRSNKYMVRNTGLIPMIVDMLKSSTRKVRCRALETLRVVVEEDDENKELLAEGDIVRTVVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSKSEDLHTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLHEGPPETKLSMAAYLGELVLNNDVKVLVAGAVGSSLINMMKSGNMQSREAALRALNQISSCEQSAKILIEAGILSPLVNDLFAVGPNQLPTRLKEISATILASVVNSGEDFFSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTISQTTVHSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIRVIAENTGITEEQAAAVGLLAELPERDLGLTRQLLDEGAFVMVISRVIAIRQGEIRGTRFMTPFLEGLVKIVARVTYVLAEEADAIALCRDHNLAGLFIDLLQSNGLDNVQMVSATALENLSQESKNLTKLPEIPPPGFCASMFSCFIKQPVITGLCRLHRGMCSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILCEADGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNMA 1926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00189 1926 Gene3D - 1424 1599 IPR011989 -
Cca07g00189 1926 MobiDBLite consensus disorder prediction 149 163 - -
Cca07g00189 1926 SMART eh_3 400 495 IPR000261 GO:0005515
Cca07g00189 1926 SMART eh_3 1 93 IPR000261 GO:0005515
Cca07g00189 1926 MobiDBLite consensus disorder prediction 545 585 - -
Cca07g00189 1926 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1114 1924 - -
Cca07g00189 1926 MobiDBLite consensus disorder prediction 146 284 - -
Cca07g00189 1926 Gene3D - 1687 1916 IPR011989 -
Cca07g00189 1926 MobiDBLite consensus disorder prediction 788 807 - -
Cca07g00189 1926 SUPERFAMILY EF-hand 396 490 IPR011992 -
Cca07g00189 1926 MobiDBLite consensus disorder prediction 257 284 - -
Cca07g00189 1926 Pfam U-box domain 1144 1218 IPR003613 GO:0004842|GO:0016567
Cca07g00189 1926 ProSiteProfiles U-box domain profile. 1141 1220 IPR003613 GO:0004842|GO:0016567
Cca07g00189 1926 MobiDBLite consensus disorder prediction 227 245 - -
Cca07g00189 1926 Gene3D - 1219 1423 IPR011989 -
Cca07g00189 1926 MobiDBLite consensus disorder prediction 355 404 - -
Cca07g00189 1926 ProSiteProfiles EH domain profile. 407 490 IPR000261 GO:0005515
Cca07g00189 1926 MobiDBLite consensus disorder prediction 178 200 - -
Cca07g00189 1926 ProSiteProfiles EH domain profile. 5 95 IPR000261 GO:0005515
Cca07g00189 1926 MobiDBLite consensus disorder prediction 834 849 - -
Cca07g00189 1926 CDD EH 9 75 IPR000261 GO:0005515
Cca07g00189 1926 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Cca07g00189 1926 SUPERFAMILY ARM repeat 1232 1557 IPR016024 -
Cca07g00189 1926 SMART Ubox_2 1145 1213 IPR003613 GO:0004842|GO:0016567
Cca07g00189 1926 Coils Coil 1369 1389 - -
Cca07g00189 1926 Pfam Cytoskeletal-regulatory complex EF hand 401 487 IPR000261 GO:0005515
Cca07g00189 1926 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Cca07g00189 1926 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1114 1924 - -
Cca07g00189 1926 Gene3D - 3 99 - -
Cca07g00189 1926 SUPERFAMILY RING/U-box 1137 1223 - -
Cca07g00189 1926 CDD RING-Ubox_PUB 1146 1193 IPR045210 -
Cca07g00189 1926 SUPERFAMILY ARM repeat 1570 1912 IPR016024 -
Cca07g00189 1926 MobiDBLite consensus disorder prediction 515 594 - -
Cca07g00189 1926 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1143 1218 IPR013083 -
Cca07g00189 1926 Pfam EF hand 10 26 IPR002048 GO:0005509
Cca07g00189 1926 MobiDBLite consensus disorder prediction 106 127 - -
Cca07g00189 1926 Gene3D - 389 492 - -
Cca07g00189 1926 SMART arm_5 1294 1334 IPR000225 GO:0005515
Cca07g00189 1926 SMART arm_5 1420 1459 IPR000225 GO:0005515
Cca07g00189 1926 SMART arm_5 1830 1872 IPR000225 GO:0005515
Cca07g00189 1926 SMART arm_5 1460 1505 IPR000225 GO:0005515
Cca07g00189 1926 SMART arm_5 1703 1744 IPR000225 GO:0005515
Cca07g00189 1926 SMART arm_5 1379 1419 IPR000225 GO:0005515
Cca07g00189 1926 SMART arm_5 1252 1292 IPR000225 GO:0005515
Cca07g00189 1926 SMART arm_5 1785 1826 IPR000225 GO:0005515
Cca07g00189 1926 CDD EH 411 477 IPR000261 GO:0005515
Cca07g00189 1926 MobiDBLite consensus disorder prediction 808 831 - -
Cca07g00189 1926 MobiDBLite consensus disorder prediction 787 863 - -
Cca07g00189 1926 SMART efh_1 444 472 IPR002048 GO:0005509
Cca07g00189 1926 SMART efh_1 42 70 IPR002048 GO:0005509
Cca07g00189 1926 SMART efh_1 8 36 IPR002048 GO:0005509
Cca07g00189 1926 SMART efh_1 410 438 IPR002048 GO:0005509
Cca07g00189 1926 Coils Coil 662 682 - -
Cca07g00189 1926 SUPERFAMILY EF-hand 5 83 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00189 Cca-Chr7 2370173 2387649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00189 1115 1925 U-box Gene Family AT1G76390 64.699 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00189 - - ccaj:109801808 1992.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00189 07 2370173 2387649 Cca07g00189 07 2370173 2387649 ECH